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package eu.dnetlib.data.mapreduce.hbase.statsExport.utils;
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import com.google.common.collect.Multimap;
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import eu.dnetlib.data.mapreduce.util.LicenseComparator;
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import eu.dnetlib.data.proto.DatasourceProtos.Datasource;
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import eu.dnetlib.data.proto.DatasourceProtos.Datasource.Metadata;
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import eu.dnetlib.data.proto.FieldTypeProtos;
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import eu.dnetlib.data.proto.FieldTypeProtos.Qualifier;
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import eu.dnetlib.data.proto.FieldTypeProtos.StringField;
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import eu.dnetlib.data.proto.FieldTypeProtos.StructuredProperty;
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import eu.dnetlib.data.proto.OafProtos.Oaf;
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import eu.dnetlib.data.proto.OafProtos.OafEntity;
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import eu.dnetlib.data.proto.OafProtos.OafRel;
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import eu.dnetlib.data.proto.OrganizationProtos.Organization;
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//import eu.dnetlib.data.proto.PersonProtos;
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import eu.dnetlib.data.proto.ProjectProtos.Project;
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import eu.dnetlib.data.proto.RelTypeProtos.RelType;
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import eu.dnetlib.data.proto.ResultProtos.Result;
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import eu.dnetlib.data.proto.ResultProtos.Result.Instance;
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import org.apache.log4j.Logger;
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import org.jsoup.Jsoup;
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import java.text.DateFormat;
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import java.text.ParseException;
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import java.text.SimpleDateFormat;
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import java.util.ArrayList;
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import java.util.Date;
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import java.util.HashMap;
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import java.util.List;
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import org.w3c.dom.Element;
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import org.w3c.dom.NodeList;
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import org.xml.sax.InputSource;
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import com.sun.org.apache.xerces.internal.parsers.DOMParser;
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import org.w3c.dom.Document;
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/**
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* @author eri Simple serializer that parses input Oaf Protos and prepares them
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* for sqoop
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*/
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public class Serializer {
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public static String serialize(Oaf oaf, String DELIM, String ENCLOSING) {
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switch (oaf.getKind()) {
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case entity:
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OafEntity valueEntity = oaf.getEntity();
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switch (valueEntity.getType()) {
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case datasource:
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return buildDatasource(oaf, DELIM, ENCLOSING);
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case organization:
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return buildOrganization(oaf, DELIM, ENCLOSING);
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case project:
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return buildProject(oaf, DELIM, ENCLOSING);
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case result:
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return buildResult(oaf, DELIM, ENCLOSING);
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/*
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case person:
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return buildPerson(oaf, DELIM, ENCLOSING);
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*/
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default:
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break;
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}
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break;
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case relation:
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return buildRel(oaf.getRel(), DELIM, ENCLOSING);
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}
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return null;
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}
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public static String serialize(OafRel oaf, String DELIM, String ENCLOSING) {
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switch (oaf.getRelType()) {
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case resultProject:
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return getResultProject(oaf, DELIM, ENCLOSING);
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default:
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return buildRel(oaf, DELIM, ENCLOSING);
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}
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}
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private static String buildRel(OafRel Rel, String DELIM, String ENCLOSING) {
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return cleanId(Rel.getTarget(), DELIM, ENCLOSING) + DELIM;
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}
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public static void extractRelations(Oaf oaf, String DELIM, String ENCLOSING, Multimap<String, String> relations) {
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OafEntity valueEntity = oaf.getEntity();
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getOriginalId(valueEntity, relations, DELIM, ENCLOSING);
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switch (valueEntity.getType()) {
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case datasource:
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getDatasourceLanguages(valueEntity, relations, DELIM, ENCLOSING);
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getDatasourceWebsite(valueEntity, relations, DELIM, ENCLOSING);
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case result:
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getResultTopics(valueEntity, relations, DELIM, ENCLOSING);
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getResultLanguages(valueEntity, relations, DELIM, ENCLOSING);
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getResultClassifications(valueEntity, relations, DELIM, ENCLOSING);
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getResultDatasources(valueEntity, relations, DELIM, ENCLOSING);
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getResultConcepts(valueEntity, relations, DELIM, ENCLOSING);
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getResultDois(valueEntity, relations, DELIM, ENCLOSING);
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getResultCitations(valueEntity, relations, DELIM, ENCLOSING);
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getResultDescriptions(valueEntity, relations, DELIM, ENCLOSING);
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getResultExtra(valueEntity, relations, DELIM, ENCLOSING);
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case project:
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getProjectKeywords(valueEntity, relations, DELIM, ENCLOSING);
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getProjectSubjects(valueEntity, relations, DELIM, ENCLOSING);
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default:
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}
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}
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private static void getDatasourceWebsite(OafEntity valueEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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Datasource d = valueEntity.getDatasource();
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Metadata metadata = d.getMetadata();
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relations.put("datasourceWebsite", getStringField(metadata.getWebsiteurl().getValue(), DELIM, ENCLOSING));
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}
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private static void getResultExtra(OafEntity valueEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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Result result = valueEntity.getResult();
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Result.Metadata metadata = result.getMetadata();
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StringBuilder buff = new StringBuilder();
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String titleString = "";
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for (int i = 0; i < metadata.getTitleList().size(); i++) {
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StructuredProperty title = metadata.getTitleList().get(i);
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titleString = title.getValue().replaceAll("\\s+", " ");
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titleString = titleString.replaceAll("\n", " ");
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break;
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}
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// pubtitle
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buff.append(getStringField(titleString, DELIM, ENCLOSING));
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String sources = "";
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for (Instance instance : (result.getInstanceList())) {
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List<String> urls = instance.getUrlList();
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for (String url : urls) {
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sources += cleanUrl(url, DELIM, ENCLOSING) + " ;";
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}
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}
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//sources
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sources = ENCLOSING + sources + ENCLOSING + DELIM;
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buff.append(sources);
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relations.put("resultExtra", buff.toString());
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}
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private static void getOriginalId(OafEntity oafEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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String relName = oafEntity.getType().toString().toLowerCase() + "Oid";
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for (String oid : oafEntity.getOriginalIdList()) {
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relations.put(relName, cleanId(oid, DELIM, ENCLOSING));
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}
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}
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private static void getProjectKeywords(OafEntity oafEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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relations.put("projectKeyword", getStringField(oafEntity.getProject().getMetadata().getKeywords().getValue(), DELIM, ENCLOSING));
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}
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private static void getProjectSubjects(OafEntity oafEntity, Multimap<String, String> relations, String DELIM, String ENCLOSING) {
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for (StructuredProperty subj : oafEntity.getProject().getMetadata().getSubjectsList()) {
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relations.put("projectSubject", getStringField(subj.getValue(), DELIM, ENCLOSING));
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}
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}
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private static String getResultProject(OafRel oaf, String DELIM, String ENCLOSING) {
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StringBuilder buff = new StringBuilder();
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buff.append(cleanId(oaf.getTarget(), DELIM, ENCLOSING) + DELIM);
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// TODO is declared as int!!!
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long diff = DATEDIFF(oaf.getResultProject().getOutcome().getRelMetadata().getEnddate(), oaf.getResultProject().getOutcome().getRelMetadata().getStartdate());
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if (diff < 0) {
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diff = 0;
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}
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buff.append(getNumericField(String.valueOf(diff), DELIM, ENCLOSING));
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return buff.toString();
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}
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private static void getDatasourceLanguages(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Datasource d = valueEntity.getDatasource();
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Metadata metadata = d.getMetadata();
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for (StringField lang : metadata.getOdlanguagesList()) {
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rels.put("datasourceLanguage", getStringField(lang.getValue(), DELIM, ENCLOSING));
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}
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}
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private static void getResultLanguages(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Result d = valueEntity.getResult();
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Result.Metadata metadata = d.getMetadata();
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if (metadata.getLanguage().getClassname() != null && !metadata.getLanguage().getClassname().isEmpty()) {
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rels.put("resultLanguage", getStringField(metadata.getLanguage().getClassname(), DELIM, ENCLOSING));
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}
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}
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private static void getResultDois(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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for (StructuredProperty pid : valueEntity.getPidList()) {
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rels.put("resultPid",
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getStringField(pid.getQualifier().getClassname(), DELIM, ENCLOSING) + getStringField(pid.getValue(), DELIM, ENCLOSING));
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}
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}
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private static void getResultClassifications(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Result result = valueEntity.getResult();
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for (Instance instance : (result.getInstanceList())) {
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String classification = instance.getInstancetype().getClassname();
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if (classification != null && !classification.isEmpty()) {
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rels.put("resultClassification", getStringField(instance.getInstancetype().getClassname(), DELIM, ENCLOSING));
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// TODO HERE KEEP ONLY ONE CLASSIFICATIONS PER RESULT
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break;
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}
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}
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240
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}
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241
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242
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private static void getResultDescriptions(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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Result result = valueEntity.getResult();
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//description
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for (StringField s : result.getMetadata().getDescriptionList()) {
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246
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247
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rels.put("resultDescription", getStringField(Jsoup.parse(s.getValue()).text(), DELIM, ENCLOSING));
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}
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249
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}
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250
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251
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private static void getResultConcepts(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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252
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253
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Result result = valueEntity.getResult();
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254
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255
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256
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for (Result.Context context : result.getMetadata().getContextList()) {
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257
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258
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rels.put("resultConcept", cleanId(context.getId(), DELIM, ENCLOSING));
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259
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}
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260
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}
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261
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262
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private static void getResultDatasources(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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263
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Result result = valueEntity.getResult();
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264
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265
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//TODO hosted by
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266
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for (Instance instance : (result.getInstanceList())) {
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267
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String hostedBy = instance.getHostedby().getKey();
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268
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if (hostedBy != null && !hostedBy.isEmpty()) {
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269
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rels.put("resultDatasource", cleanId(hostedBy, DELIM, ENCLOSING) + DELIM);
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270
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}
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271
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}
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272
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273
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//TODO collected froms
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274
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for (FieldTypeProtos.KeyValue collectedFromValue : (valueEntity.getCollectedfromList())) {
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275
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276
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String collectedFrom = collectedFromValue.getKey();
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277
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if (collectedFrom != null && !collectedFrom.isEmpty()) {
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278
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rels.put("resultDatasource", cleanId(collectedFrom, DELIM, ENCLOSING) + DELIM);
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279
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}
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280
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}
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281
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}
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282
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283
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private static void getResultTopics(OafEntity valueEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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284
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285
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Result d = valueEntity.getResult();
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286
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Result.Metadata metadata = d.getMetadata();
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287
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288
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List<StructuredProperty> Topics = metadata.getSubjectList();
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289
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290
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for (StructuredProperty topic : Topics) {
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291
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// TODO result topics
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292
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rels.put("resultTopic", getStringField(topic.getValue(), DELIM, ENCLOSING));
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293
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}
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294
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}
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295
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296
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297
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private static void getResultCitations(OafEntity oafEntity, Multimap<String, String> rels, String DELIM, String ENCLOSING) {
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298
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for (FieldTypeProtos.ExtraInfo extraInfo : oafEntity.getExtraInfoList()) {
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299
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if (extraInfo.getName().equals("result citations")) {
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300
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DOMParser parser = new DOMParser();
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301
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try {
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302
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parser.parse(new InputSource(new java.io.StringReader(extraInfo.getValue())));
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303
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Document doc = parser.getDocument();
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304
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doc.getDocumentElement().normalize();
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305
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306
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NodeList citations = doc.getElementsByTagName("citation");
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307
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for (int temp = 0; temp < citations.getLength(); temp++) {
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308
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Element citation = (Element) citations.item(temp);
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309
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NodeList ids = citation.getElementsByTagName("id");
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310
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for(int temp1 = 0; temp1 < ids.getLength(); temp1++){
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311
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Element id = (Element) ids.item(temp1);
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312
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if(id.getAttribute("type").equals("openaire")){
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313
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//System.out.println(id.getAttribute("value"));
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314
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rels.put("resultCitation", id.getAttribute("value"));
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315
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}
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|
316
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}
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|
317
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}
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|
318
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} catch (Exception e) {
|
|
319
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|
|
320
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}
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|
321
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322
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/*
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323
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rels.put("resultCitation", getStringField(extraInfo.getTrust(), DELIM, ENCLOSING) +
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324
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getStringField(extraInfo.getProvenance(), DELIM, ENCLOSING) + getStringField(extraInfo.getValue(), DELIM, ENCLOSING));
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|
325
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*/
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|
326
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}
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|
327
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|
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328
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}
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329
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}
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|
330
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331
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private static String buildDatasource(Oaf oaf, String DELIM, String ENCLOSING) {
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332
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Metadata metadata = oaf.getEntity().getDatasource().getMetadata();
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333
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StringBuilder buff = new StringBuilder();
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334
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335
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// name
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336
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if (metadata.getOfficialname().getValue().equalsIgnoreCase("unknown")) {
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337
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buff.append(getStringField("Unknown Repository", DELIM, ENCLOSING));
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338
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} else {
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339
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buff.append(getStringField(metadata.getOfficialname().getValue(), DELIM, ENCLOSING));
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340
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}
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341
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342
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// type
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343
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if (metadata.hasDatasourcetype()) {
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344
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buff.append(getStringField(metadata.getDatasourcetype().getClassname().replaceFirst(".*::", ""), DELIM, ENCLOSING));
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345
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}
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|
346
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347
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// compatibility,
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348
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buff.append(getStringField(metadata.getOpenairecompatibility().getClassname(), DELIM, ENCLOSING));
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349
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|
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350
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// dateofvalidation,
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351
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buff.append(getStringDateField(metadata.getDateofvalidation().getValue(), DELIM, ENCLOSING));
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352
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|
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353
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// yearofvalidation,
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354
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buff.append(getYearInt(metadata.getDateofvalidation().getValue(), DELIM, ENCLOSING));
|
|
355
|
|
|
356
|
//harvested
|
|
357
|
buff.append(getStringField("false", DELIM, ENCLOSING));
|
|
358
|
|
|
359
|
//piwik_id
|
|
360
|
String piwik_id = "";
|
|
361
|
for (String oid : oaf.getEntity().getOriginalIdList()) {
|
|
362
|
if (oid.contains("piwik")) {
|
|
363
|
piwik_id = oid.split(":")[1];
|
|
364
|
break;
|
|
365
|
}
|
|
366
|
}
|
|
367
|
buff.append(getStringField(cleanNumber(piwik_id), DELIM, ENCLOSING));
|
|
368
|
|
|
369
|
return buff.toString();
|
|
370
|
|
|
371
|
}
|
|
372
|
|
|
373
|
private static String buildOrganization(Oaf oaf, String DELIM, String ENCLOSING) {
|
|
374
|
|
|
375
|
StringBuilder buff = new StringBuilder();
|
|
376
|
Organization.Metadata metadata = oaf.getEntity().getOrganization().getMetadata();
|
|
377
|
|
|
378
|
// `name`,
|
|
379
|
buff.append(getStringField(metadata.getLegalname().getValue(), DELIM, ENCLOSING));
|
|
380
|
|
|
381
|
// `country`,
|
|
382
|
buff.append(getStringField(metadata.getCountry().getClassid(), DELIM, ENCLOSING));
|
|
383
|
|
|
384
|
return buff.toString();
|
|
385
|
}
|
|
386
|
|
|
387
|
private static String buildResult(Oaf oaf, String DELIM, String ENCLOSING) {
|
|
388
|
StringBuilder buff = new StringBuilder();
|
|
389
|
|
|
390
|
Result.Metadata metadata = oaf.getEntity().getResult().getMetadata();
|
|
391
|
|
|
392
|
// publisher
|
|
393
|
buff.append(getStringField(metadata.getPublisher().getValue(), DELIM, ENCLOSING));
|
|
394
|
|
|
395
|
// journal
|
|
396
|
buff.append(getStringField(metadata.getJournal().getName(), DELIM, ENCLOSING)); //#null#!
|
|
397
|
|
|
398
|
// year
|
|
399
|
buff.append(getYearInt(metadata.getDateofacceptance().getValue(), DELIM, ENCLOSING));
|
|
400
|
|
|
401
|
// date
|
|
402
|
buff.append(getStringDateField(metadata.getDateofacceptance().getValue(), DELIM, ENCLOSING));
|
|
403
|
|
|
404
|
// bestlicense
|
|
405
|
buff.append(getStringField(getBestLicense(oaf.getEntity().getResult()), DELIM, ENCLOSING));
|
|
406
|
|
|
407
|
// type
|
|
408
|
buff.append(getStringField(metadata.getResulttype().getClassname(), DELIM, ENCLOSING));
|
|
409
|
|
|
410
|
// embargo_end_date
|
|
411
|
buff.append(getStringDateField(metadata.getEmbargoenddate().getValue(), DELIM, ENCLOSING));
|
|
412
|
|
|
413
|
// `authors`,
|
|
414
|
int authors = metadata.getAuthorCount();
|
|
415
|
|
|
416
|
|
|
417
|
String delayed = "no";
|
|
418
|
|
|
419
|
for (OafRel rel : oaf.getEntity().getCachedRelList()) {
|
|
420
|
|
|
421
|
/*
|
|
422
|
if (rel.getRelType().equals(RelType.personResult)) {
|
|
423
|
|
|
424
|
authors++;
|
|
425
|
} else
|
|
426
|
*/
|
|
427
|
if (rel.getRelType().equals(RelType.resultProject))
|
|
428
|
// TODO remember : in result Project, first id is project, second is
|
|
429
|
// result.
|
|
430
|
{
|
|
431
|
String daysfromend = getYearDifferenceInteger(rel.getResultProject().getOutcome().getRelMetadata().getEnddate(),
|
|
432
|
rel.getResultProject().getOutcome().getRelMetadata().getStartdate(), DELIM, ENCLOSING);
|
|
433
|
if (Integer.parseInt(daysfromend) > 0) {
|
|
434
|
delayed = "yes";
|
|
435
|
}
|
|
436
|
}
|
|
437
|
}
|
|
438
|
|
|
439
|
// `delayed`,
|
|
440
|
buff.append(getStringField(delayed, DELIM, ENCLOSING));
|
|
441
|
//authors
|
|
442
|
buff.append(getNumericField(String.valueOf(authors), DELIM, ENCLOSING));
|
|
443
|
|
|
444
|
return buff.toString();
|
|
445
|
|
|
446
|
}
|
|
447
|
|
|
448
|
|
|
449
|
/*
|
|
450
|
private static String getBestLicense(Result result) {
|
|
451
|
Qualifier bestLicense = null;
|
|
452
|
LicenseComparator lc = new LicenseComparator();
|
|
453
|
for (Instance instance : (result.getInstanceList())) {
|
|
454
|
if (lc.compare(bestLicense, instance.getLicence()) > 0) {
|
|
455
|
bestLicense = instance.getLicence();
|
|
456
|
}
|
|
457
|
}
|
|
458
|
if (bestLicense != null) {
|
|
459
|
return bestLicense.getClassname();
|
|
460
|
} else {
|
|
461
|
return null;
|
|
462
|
}
|
|
463
|
}
|
|
464
|
|
|
465
|
// TODO here iterate over all values
|
|
466
|
private static String getAccessMode(Result result) {
|
|
467
|
String accessMode = " ";
|
|
468
|
for (Instance instance : (result.getInstanceList())) {
|
|
469
|
if (instance.getLicence().getClassname() != null && !instance.getLicence().getClassname().isEmpty()) {
|
|
470
|
accessMode = instance.getLicence().getClassname();
|
|
471
|
break;
|
|
472
|
}
|
|
473
|
|
|
474
|
}
|
|
475
|
|
|
476
|
return accessMode;
|
|
477
|
}
|
|
478
|
*/
|
|
479
|
|
|
480
|
private static String getBestLicense(Result result) {
|
|
481
|
Qualifier bestLicense = null;
|
|
482
|
LicenseComparator lc = new LicenseComparator();
|
|
483
|
for (Instance instance : (result.getInstanceList())) {
|
|
484
|
if (lc.compare(bestLicense, instance.getAccessright()) > 0) {
|
|
485
|
bestLicense = instance.getAccessright();
|
|
486
|
}
|
|
487
|
}
|
|
488
|
if (bestLicense != null) {
|
|
489
|
return bestLicense.getClassname();
|
|
490
|
} else {
|
|
491
|
return null;
|
|
492
|
}
|
|
493
|
}
|
|
494
|
|
|
495
|
// TODO here iterate over all values
|
|
496
|
private static String getAccessMode(Result result) {
|
|
497
|
String accessMode = " ";
|
|
498
|
for (Instance instance : (result.getInstanceList())) {
|
|
499
|
if (instance.getAccessright().getClassname() != null && !instance.getAccessright().getClassname().isEmpty()) {
|
|
500
|
accessMode = instance.getAccessright().getClassname();
|
|
501
|
break;
|
|
502
|
}
|
|
503
|
|
|
504
|
}
|
|
505
|
|
|
506
|
return accessMode;
|
|
507
|
}
|
|
508
|
|
|
509
|
private static String buildProject(Oaf oaf, String DELIM, String ENCLOSING) {
|
|
510
|
|
|
511
|
StringBuilder buff = new StringBuilder();
|
|
512
|
Project.Metadata metadata = oaf.getEntity().getProject().getMetadata();
|
|
513
|
|
|
514
|
// `acronym`,
|
|
515
|
String acronym = metadata.getAcronym().getValue();
|
|
516
|
if (acronym.equalsIgnoreCase("UNKNOWN")) {
|
|
517
|
acronym = metadata.getTitle().getValue();
|
|
518
|
}
|
|
519
|
buff.append(getStringField(acronym, DELIM, ENCLOSING));
|
|
520
|
|
|
521
|
//title
|
|
522
|
buff.append(getStringField(metadata.getTitle().getValue(), DELIM, ENCLOSING));
|
|
523
|
|
|
524
|
//funding_lvl
|
|
525
|
List<StringField> fundList = metadata.getFundingtreeList();
|
|
526
|
if (!fundList.isEmpty()) // `funding_lvl0`,
|
|
527
|
{
|
|
528
|
//TODO funder + 3 funding levels
|
|
529
|
/* funder text,
|
|
530
|
funding_lvl0 text,
|
|
531
|
funding_lvl1 text,
|
|
532
|
funding_lvl2 text,
|
|
533
|
funding_lvl3 text,*/
|
|
534
|
buff.append(FundingParser.getFundingInfo(fundList.get(0).getValue(), DELIM, ENCLOSING));
|
|
535
|
} else {
|
|
536
|
buff.append(FundingParser.getFundingInfo("", DELIM, ENCLOSING));
|
|
537
|
}
|
|
538
|
|
|
539
|
//sc39
|
|
540
|
String sc39 = metadata.getEcsc39().getValue().toString();
|
|
541
|
if (sc39.equalsIgnoreCase("true") || sc39.equalsIgnoreCase("t") || sc39.contains("yes")) {
|
|
542
|
sc39 = "yes";
|
|
543
|
} else if (sc39.equalsIgnoreCase("false") || sc39.equalsIgnoreCase("f") || sc39.contains("no")) {
|
|
544
|
sc39 = "no";
|
|
545
|
}
|
|
546
|
buff.append(getStringField(sc39, DELIM, ENCLOSING));
|
|
547
|
|
|
548
|
//project_type
|
|
549
|
buff.append(getStringField(metadata.getContracttype().getClassid(),DELIM, ENCLOSING));
|
|
550
|
|
|
551
|
// start_year
|
|
552
|
buff.append(getYearInt(metadata.getStartdate().getValue(), DELIM, ENCLOSING));
|
|
553
|
|
|
554
|
// end_year
|
|
555
|
buff.append(getYearInt(metadata.getEnddate().getValue(), DELIM, ENCLOSING));
|
|
556
|
|
|
557
|
// duration enddate-startdate
|
|
558
|
buff.append(getYearDifferenceInteger(metadata.getEnddate().getValue(), metadata.getStartdate().getValue(), DELIM, ENCLOSING));
|
|
559
|
|
|
560
|
// haspubs
|
|
561
|
buff.append(getStringField("no", DELIM, ENCLOSING));
|
|
562
|
|
|
563
|
// numpubs
|
|
564
|
buff.append(getNumericField("0", DELIM, ENCLOSING));
|
|
565
|
|
|
566
|
// enddate
|
|
567
|
buff.append(getStringDateField(metadata.getEnddate().getValue(), DELIM, ENCLOSING));
|
|
568
|
|
|
569
|
// startdate
|
|
570
|
buff.append(getStringDateField(metadata.getStartdate().getValue(), DELIM, ENCLOSING));
|
|
571
|
|
|
572
|
// `daysforlastpub`,
|
|
573
|
buff.append(getNumericField("", DELIM, ENCLOSING));
|
|
574
|
|
|
575
|
// `delayedpubs`,
|
|
576
|
buff.append(getNumericField("", DELIM, ENCLOSING));
|
|
577
|
|
|
578
|
//call identifier
|
|
579
|
buff.append(getStringField(metadata.getCallidentifier().getValue(), DELIM, ENCLOSING));
|
|
580
|
|
|
581
|
//code
|
|
582
|
buff.append(getStringField(metadata.getCode().getValue(), DELIM, ENCLOSING));
|
|
583
|
|
|
584
|
return buff.toString();
|
|
585
|
|
|
586
|
}
|
|
587
|
|
|
588
|
/*
|
|
589
|
private static String buildPerson(Oaf oaf, String DELIM, String ENCLOSING) {
|
|
590
|
StringBuilder buff = new StringBuilder();
|
|
591
|
|
|
592
|
PersonProtos.Person.Metadata metadata = oaf.getEntity().getPerson().getMetadata();
|
|
593
|
|
|
594
|
// `person_id`,
|
|
595
|
//buff.append(cleanId(oaf.getEntity().getId(), DELIM, ENCLOSING) + DELIM);
|
|
596
|
|
|
597
|
|
|
598
|
// person_result
|
|
599
|
buff.append(cleanId(oaf.getEntity().getId(), DELIM, ENCLOSING) + DELIM);
|
|
600
|
|
|
601
|
|
|
602
|
//firstName
|
|
603
|
buff.append(getStringField(metadata.getFirstname().getValue(), DELIM, ENCLOSING));
|
|
604
|
|
|
605
|
//LastName
|
|
606
|
|
|
607
|
String secondName = new String();
|
|
608
|
for (StringField s : metadata.getSecondnamesList()) {
|
|
609
|
secondName += s.getValue().replace("\n", " ").replace(",", " ") + " ";
|
|
610
|
}
|
|
611
|
|
|
612
|
buff.append(getStringField(secondName, DELIM, ENCLOSING));
|
|
613
|
|
|
614
|
// `fullname`,
|
|
615
|
buff.append(getStringField(metadata.getFullname().getValue(), DELIM, ENCLOSING));
|
|
616
|
|
|
617
|
// `Nationality`,
|
|
618
|
buff.append(getStringField(metadata.getNationality().getClassid(), DELIM, ENCLOSING));
|
|
619
|
|
|
620
|
// `Email`,
|
|
621
|
buff.append(getStringField(metadata.getEmail().getValue(), DELIM, ENCLOSING));
|
|
622
|
|
|
623
|
// `Phone`,
|
|
624
|
buff.append(getStringField(metadata.getPhone().getValue(), DELIM, ENCLOSING));
|
|
625
|
|
|
626
|
//deletedByInference
|
|
627
|
|
|
628
|
buff.append(getStringField(String.valueOf(oaf.getDataInfo().getDeletedbyinference()), DELIM, ENCLOSING));
|
|
629
|
|
|
630
|
// `number`,
|
|
631
|
buff.append(getStringField("1", DELIM, ENCLOSING));
|
|
632
|
|
|
633
|
return buff.toString();
|
|
634
|
|
|
635
|
}
|
|
636
|
*/
|
|
637
|
|
|
638
|
|
|
639
|
private static String getYearDifferenceInteger(String enddate, String startdate, String DELIM, String ENCLOSING) {
|
|
640
|
|
|
641
|
if (enddate != null && !enddate.isEmpty() && startdate != null && !startdate.isEmpty()) {
|
|
642
|
|
|
643
|
String[] split = startdate.split("-");
|
|
644
|
|
|
645
|
if (split == null || split.length == 0) {
|
|
646
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
|
647
|
}
|
|
648
|
|
|
649
|
int Startdate = Integer.parseInt(split[0]);
|
|
650
|
|
|
651
|
split = enddate.split("-");
|
|
652
|
|
|
653
|
if (split == null || split.length == 0) {
|
|
654
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
|
655
|
}
|
|
656
|
|
|
657
|
int Enddate = Integer.parseInt(split[0]);
|
|
658
|
|
|
659
|
int diff = Enddate - Startdate;
|
|
660
|
|
|
661
|
return ENCLOSING + diff + ENCLOSING + DELIM;
|
|
662
|
|
|
663
|
}
|
|
664
|
|
|
665
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
|
666
|
}
|
|
667
|
|
|
668
|
private static String getYearInt(String data, String DELIM, String ENCLOSING) {
|
|
669
|
if (data == null || data.isEmpty() || data.equals("-1")) {
|
|
670
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
|
671
|
}
|
|
672
|
|
|
673
|
String[] split = data.split("-");
|
|
674
|
|
|
675
|
if (split == null || split.length == 0) {
|
|
676
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
|
677
|
}
|
|
678
|
|
|
679
|
String year = split[0];
|
|
680
|
|
|
681
|
year = cleanNumber(year);
|
|
682
|
|
|
683
|
if (year == null || year.isEmpty()) year = "0";
|
|
684
|
|
|
685
|
return ENCLOSING + year + ENCLOSING + DELIM;
|
|
686
|
|
|
687
|
}
|
|
688
|
|
|
689
|
private static String cleanNumber(String number) {
|
|
690
|
number = number.replaceAll("[^A-Za-z0-9:,____]", "");
|
|
691
|
return number;
|
|
692
|
}
|
|
693
|
|
|
694
|
private static String getLatLongField(String data, String DELIM, String ENCLOSING) {
|
|
695
|
|
|
696
|
if (data == null || data.isEmpty()) return ENCLOSING + "null" + ENCLOSING + DELIM;
|
|
697
|
|
|
698
|
return ENCLOSING + data.replaceAll("[^-0-9.]+", "") + ENCLOSING + DELIM;
|
|
699
|
|
|
700
|
}
|
|
701
|
|
|
702
|
private static String getStringField(String data, String DELIM, String ENCLOSING) {
|
|
703
|
|
|
704
|
if (data == null || data.isEmpty()) return ENCLOSING + "null" + ENCLOSING + DELIM;
|
|
705
|
|
|
706
|
return ENCLOSING + clean(data, DELIM, ENCLOSING) + ENCLOSING + DELIM;
|
|
707
|
|
|
708
|
}
|
|
709
|
|
|
710
|
private static String getStringDateField(String data, String DELIM, String ENCLOSING) {
|
|
711
|
if (data == null || data.isEmpty() || data.equals("") || data.equals("-1")) {
|
|
712
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
|
713
|
} else {
|
|
714
|
data = data.replace(DELIM, " ");
|
|
715
|
data = data.replace(ENCLOSING, " ");
|
|
716
|
data = data.replaceAll("\\r\\n|\\r|\\n", "");
|
|
717
|
try {
|
|
718
|
DateFormat format = new SimpleDateFormat("yyyy-MM-dd");
|
|
719
|
data = format.format(format.parse(data));
|
|
720
|
return ENCLOSING + data + ENCLOSING + DELIM;
|
|
721
|
} catch (ParseException e) {
|
|
722
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
|
723
|
}
|
|
724
|
}
|
|
725
|
}
|
|
726
|
|
|
727
|
private static String getNumericField(String data, String DELIM, String ENCLOSING) {
|
|
728
|
if (data == null || data.isEmpty() || data.equals("")) {
|
|
729
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
|
730
|
} else {
|
|
731
|
return ENCLOSING + data + ENCLOSING + DELIM;
|
|
732
|
}
|
|
733
|
}
|
|
734
|
|
|
735
|
public static String getId(Oaf oaf, String DELIM, String ENCLOSING) {
|
|
736
|
switch (oaf.getKind()) {
|
|
737
|
case entity:
|
|
738
|
return cleanId(oaf.getEntity().getId(), DELIM, ENCLOSING);
|
|
739
|
case relation:
|
|
740
|
|
|
741
|
return cleanId(oaf.getRel().getSource(), DELIM, ENCLOSING);
|
|
742
|
|
|
743
|
}
|
|
744
|
return null;
|
|
745
|
|
|
746
|
}
|
|
747
|
|
|
748
|
public static String getId(OafRel relOaf, String DELIM, String ENCLOSING) {
|
|
749
|
return cleanId(relOaf.getSource(), DELIM, ENCLOSING);
|
|
750
|
}
|
|
751
|
|
|
752
|
public static String clean(String value, String DELIM, String ENCLOSING) {
|
|
753
|
if (value != null) {
|
|
754
|
|
|
755
|
value = value.replaceAll("[\"\\r\\\\;]", "");
|
|
756
|
value = value.replace(DELIM, " ");
|
|
757
|
value = value.replace(ENCLOSING, " ");
|
|
758
|
value = value.replaceAll("\\r\\n|\\r|\\n", " ");
|
|
759
|
//value = value.replace("\"", "");
|
|
760
|
//value = value.replace("'", "");
|
|
761
|
//value = value.replace("«", " ");
|
|
762
|
//value = value.replace("»", " ");
|
|
763
|
|
|
764
|
//value = value.replaceAll("[^a-zA-Z0-9 .-_:/!@+=]+", " ");
|
|
765
|
|
|
766
|
return value;
|
|
767
|
|
|
768
|
} else {
|
|
769
|
return "";
|
|
770
|
|
|
771
|
}
|
|
772
|
|
|
773
|
}
|
|
774
|
|
|
775
|
public static String cleanId(String value, String DELIM, String ENCLOSING) {
|
|
776
|
if (value != null) {
|
|
777
|
// TODO DO NOT CHANGE THIS: IT REMOVES ID PREFIX ( 5|datacite____::
|
|
778
|
|
|
779
|
// to datacite____:: )
|
|
780
|
// AND REPLACES OCCURENCES OF DELIM CHARS IN DATA
|
|
781
|
value = value.replaceFirst(".*\\|", "");
|
|
782
|
value = value.replace("\n", "");
|
|
783
|
value = value.replace(ENCLOSING, "");
|
|
784
|
value = value.replace(DELIM, "");
|
|
785
|
value = value.replace("\"", "");
|
|
786
|
value = value.replace("«", " ");
|
|
787
|
value = value.replace("»", " ");
|
|
788
|
}
|
|
789
|
|
|
790
|
return ENCLOSING + value + ENCLOSING;
|
|
791
|
|
|
792
|
}
|
|
793
|
|
|
794
|
|
|
795
|
public static String cleanUrl(String value, String DELIM, String ENCLOSING) {
|
|
796
|
value = value.replace(DELIM, " ");
|
|
797
|
value = value.replace(ENCLOSING, " ");
|
|
798
|
value = value.replace(" ", "");
|
|
799
|
value = value.replace("\n", "");
|
|
800
|
return value;
|
|
801
|
}
|
|
802
|
|
|
803
|
|
|
804
|
public static long DATEDIFF(String startDate, String endDate) {
|
|
805
|
long MILLISECS_PER_DAY = 24 * 60 * 60 * 1000;
|
|
806
|
long days = 0l;
|
|
807
|
SimpleDateFormat format = new SimpleDateFormat("yyyy-MM-dd"); // "dd/MM/yyyy HH:mm:ss");
|
|
808
|
// <startdate>2011-09-01</startdate>
|
|
809
|
// <enddate>2015-08-31</enddate>
|
|
810
|
Date dateIni = null;
|
|
811
|
Date dateFin = null;
|
|
812
|
|
|
813
|
if (startDate == null || startDate.isEmpty() || endDate == null || endDate.isEmpty()) {
|
|
814
|
return 0;
|
|
815
|
}
|
|
816
|
try {
|
|
817
|
dateIni = (Date) format.parse(startDate);
|
|
818
|
dateFin = (Date) format.parse(endDate);
|
|
819
|
days = (dateFin.getTime() - dateIni.getTime()) / MILLISECS_PER_DAY;
|
|
820
|
} catch (Exception e) {
|
|
821
|
|
|
822
|
return 0;
|
|
823
|
}
|
|
824
|
|
|
825
|
return days;
|
|
826
|
}
|
|
827
|
|
|
828
|
|
|
829
|
}
|