1 |
42742
|
eri.katsar
|
<workflow-app name="stats-export"
|
2 |
|
|
xmlns="uri:oozie:workflow:0.4">
|
3 |
|
|
<!-- map reduce job that exports hbase data and prepares them for import to the relation
|
4 |
|
|
database used for statistics generation -->
|
5 |
39902
|
eri.katsar
|
|
6 |
42742
|
eri.katsar
|
<global>
|
7 |
|
|
<job-tracker>${jobTracker}</job-tracker>
|
8 |
|
|
<name-node>${nameNode}</name-node>
|
9 |
|
|
<configuration>
|
10 |
|
|
<property>
|
11 |
|
|
<name>mapred.job.queue.name</name>
|
12 |
|
|
<value>${queueName}</value>
|
13 |
|
|
</property>
|
14 |
|
|
<property>
|
15 |
|
|
<name>oozie.sqoop.log.level</name>
|
16 |
|
|
<value>DEBUG</value>
|
17 |
|
|
</property>
|
18 |
|
|
<property>
|
19 |
|
|
<name>oozie.launcher.mapred.job.priority</name>
|
20 |
|
|
<value>NORMAL</value>
|
21 |
|
|
</property>
|
22 |
|
|
<property>
|
23 |
|
|
<name>mapred.job.priority</name>
|
24 |
|
|
<value>NORMAL</value>
|
25 |
|
|
</property>
|
26 |
|
|
</configuration>
|
27 |
|
|
</global>
|
28 |
39902
|
eri.katsar
|
|
29 |
55645
|
antonis.le
|
<start to="prepareDatabase"/>
|
30 |
|
|
<!--<start to="prepareDatabase"/>-->
|
31 |
42742
|
eri.katsar
|
|
32 |
55645
|
antonis.le
|
<action name="prepareDatabase">
|
33 |
|
|
<java>
|
34 |
|
|
<prepare>
|
35 |
|
|
</prepare>
|
36 |
|
|
<configuration>
|
37 |
|
|
<property>
|
38 |
|
|
<name>mapred.job.queue.name</name>
|
39 |
|
|
<value>${queueName}</value>
|
40 |
|
|
</property>
|
41 |
|
|
</configuration>
|
42 |
|
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<main-class>eu.dnetlib.iis.core.java.ProcessWrapper</main-class>
|
43 |
|
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<arg>-SworkingDir=${workingDir}</arg>
|
44 |
|
|
<arg>eu.dnetlib.iis.core.workflows.stats.DBInitWrapper</arg>
|
45 |
|
|
<arg>-PStats_db_Url=${Stats_db_Url}</arg>
|
46 |
|
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<arg>-PStats_db_User=${Stats_db_User}</arg>
|
47 |
|
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<arg>-PStats_db_Pass=${Stats_db_Pass}</arg>
|
48 |
|
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<arg>-PStats_db_Driver=${Stats_db_Driver}</arg>
|
49 |
|
|
</java>
|
50 |
|
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|
51 |
|
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<ok to="mr_export"/>
|
52 |
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<error to="fail"/>
|
53 |
|
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</action>
|
54 |
|
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|
55 |
42742
|
eri.katsar
|
<action name="mr_export">
|
56 |
|
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<map-reduce>
|
57 |
|
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<prepare>
|
58 |
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<delete path="${nameNode}${Stats_output_Path}"/>
|
59 |
|
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</prepare>
|
60 |
|
|
<configuration>
|
61 |
39902
|
eri.katsar
|
<property>
|
62 |
42742
|
eri.katsar
|
<name>hbase.mapreduce.scan</name>
|
63 |
|
|
<value>${wf:actionData('get-scanner')['scan']}</value>
|
64 |
|
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</property>
|
65 |
|
|
<property>
|
66 |
|
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<name>hbase.rootdir</name>
|
67 |
|
|
<value>$nameNode/hbase</value>
|
68 |
|
|
</property>
|
69 |
|
|
<property>
|
70 |
|
|
<name>hbase.security.authentication</name>
|
71 |
|
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<value>simple</value>
|
72 |
|
|
</property>
|
73 |
55645
|
antonis.le
|
|
74 |
42742
|
eri.katsar
|
<!-- ZOOKEEPER -->
|
75 |
|
|
<property>
|
76 |
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<name>hbase.zookeeper.quorum</name>
|
77 |
|
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<value>
|
78 |
|
|
namenode1.hadoop.dm.openaire.eu,namenode2.hadoop.dm.openaire.eu,jobtracker1.hadoop.dm.openaire.eu,jobtracker2.hadoop.dm.openaire.eu,hbase-master1.hadoop.dm.openaire.eu
|
79 |
|
|
</value>
|
80 |
|
|
<!-- <value> quorum1.t.hadoop.research-infrastructures.eu,quorum2.t.hadoop.research-infrastructures.eu,quorum3.t.hadoop.research-infrastructures.eu,quorum4.t.hadoop.research-infrastructures.eu,jobtracker.t.hadoop.research-infrastructures.eu
|
81 |
|
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</value> -->
|
82 |
|
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</property>
|
83 |
|
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<property>
|
84 |
|
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<name>zookeeper.znode.rootserver</name>
|
85 |
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<value>root-region-server</value>
|
86 |
|
|
|
87 |
|
|
</property>
|
88 |
|
|
<property>
|
89 |
|
|
<name>hbase.zookeeper.property.clientPort</name>
|
90 |
|
|
<value>2181</value>
|
91 |
|
|
</property>
|
92 |
|
|
|
93 |
|
|
<!-- MR IO -->
|
94 |
|
|
<property>
|
95 |
|
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<name>mapreduce.inputformat.class</name>
|
96 |
|
|
<value>org.apache.hadoop.hbase.mapreduce.TableInputFormat</value>
|
97 |
|
|
</property>
|
98 |
|
|
<property>
|
99 |
|
|
<name>mapred.mapoutput.key.class</name>
|
100 |
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<value>org.apache.hadoop.io.Text</value>
|
101 |
|
|
</property>
|
102 |
|
|
<property>
|
103 |
|
|
<name>mapred.mapoutput.value.class</name>
|
104 |
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<value>org.apache.hadoop.hbase.io.ImmutableBytesWritable</value>
|
105 |
|
|
</property>
|
106 |
|
|
<property>
|
107 |
|
|
<name>mapred.output.key.class</name>
|
108 |
|
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<value>org.apache.hadoop.io.Text</value>
|
109 |
|
|
</property>
|
110 |
|
|
<property>
|
111 |
|
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<name>mapred.output.value.class</name>
|
112 |
|
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<value>org.apache.hadoop.mapreduce.lib.output.SequenceFileOutputFormat</value>
|
113 |
|
|
</property>
|
114 |
|
|
<!-- ## This is required for new MapReduce API usage -->
|
115 |
|
|
<property>
|
116 |
|
|
<name>mapred.mapper.new-api</name>
|
117 |
|
|
<value>true</value>
|
118 |
|
|
</property>
|
119 |
|
|
<property>
|
120 |
|
|
<name>mapred.reducer.new-api</name>
|
121 |
|
|
<value>true</value>
|
122 |
|
|
</property>
|
123 |
|
|
<!-- # Job-specific options -->
|
124 |
|
|
<property>
|
125 |
|
|
<name>dfs.blocksize</name>
|
126 |
|
|
<value>32M</value>
|
127 |
|
|
</property>
|
128 |
|
|
<property>
|
129 |
|
|
<name>mapred.output.compress</name>
|
130 |
|
|
<value>false</value>
|
131 |
|
|
</property>
|
132 |
|
|
<property>
|
133 |
|
|
<name>mapred.reduce.tasks.speculative.execution</name>
|
134 |
|
|
<value>false</value>
|
135 |
|
|
</property>
|
136 |
|
|
<property>
|
137 |
|
|
<name>mapred.reduce.tasks.speculative.execution</name>
|
138 |
|
|
<value>false</value>
|
139 |
|
|
</property>
|
140 |
|
|
<property>
|
141 |
|
|
<name>mapreduce.map.speculative</name>
|
142 |
|
|
<value>false</value>
|
143 |
|
|
</property>
|
144 |
|
|
|
145 |
|
|
<!-- I/O FORMAT -->
|
146 |
|
|
<!-- IMPORTANT: sets default delimeter used by text output writer. Required to fix
|
147 |
|
|
issue with traling tab added between id and value in multiple outputs -->
|
148 |
|
|
<property>
|
149 |
|
|
<name>mapred.textoutputformat.separator</name>
|
150 |
|
|
<value>${Stats_delim_Character}</value>
|
151 |
|
|
</property>
|
152 |
|
|
<!-- ## Names of all output ports -->
|
153 |
|
|
|
154 |
|
|
<property>
|
155 |
|
|
<name>mapreduce.multipleoutputs</name>
|
156 |
|
|
|
157 |
|
|
<value>
|
158 |
|
|
${out1} ${out2} ${out3} ${out4} ${out5} ${out6} ${out7} ${out8} ${out9} ${out10} ${out11} ${out12} ${out13} ${out14} ${out15} ${out16} ${out17} ${out18} ${out19} ${out20} ${out21} ${out22} ${out23} ${out24} ${out25} ${out26} ${out27} ${out28} ${out29} ${out30} ${out31} ${out32} ${out33} ${out34} ${out35} ${out36} ${out37} ${out38} ${out39}
|
159 |
|
|
</value>
|
160 |
|
|
|
161 |
|
|
</property>
|
162 |
|
|
<!-- datasource -->
|
163 |
|
|
<property>
|
164 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out1}.key</name>
|
165 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
166 |
|
|
</property>
|
167 |
|
|
<property>
|
168 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out1}.value</name>
|
169 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
170 |
|
|
</property>
|
171 |
|
|
<property>
|
172 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out1}.format</name>
|
173 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
174 |
|
|
</property>
|
175 |
|
|
<!-- project -->
|
176 |
|
|
<property>
|
177 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out2}.key</name>
|
178 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
179 |
|
|
</property>
|
180 |
|
|
<property>
|
181 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out2}.value</name>
|
182 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
183 |
|
|
</property>
|
184 |
|
|
<property>
|
185 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out2}.format</name>
|
186 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
187 |
|
|
</property>
|
188 |
|
|
|
189 |
|
|
<!-- organization -->
|
190 |
|
|
<property>
|
191 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out3}.key</name>
|
192 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
193 |
|
|
</property>
|
194 |
|
|
<property>
|
195 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out3}.value</name>
|
196 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
197 |
|
|
</property>
|
198 |
|
|
<property>
|
199 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out3}.format</name>
|
200 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
201 |
|
|
</property>
|
202 |
|
|
|
203 |
|
|
<!-- datasourceOrganization -->
|
204 |
|
|
<property>
|
205 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out4}.key</name>
|
206 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
207 |
|
|
</property>
|
208 |
|
|
<property>
|
209 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out4}.value</name>
|
210 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
211 |
|
|
</property>
|
212 |
|
|
<property>
|
213 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out4}.format</name>
|
214 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
215 |
|
|
</property>
|
216 |
|
|
|
217 |
|
|
<!-- datasourceTopic -->
|
218 |
|
|
<property>
|
219 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out5}.key</name>
|
220 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
221 |
|
|
</property>
|
222 |
|
|
<property>
|
223 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out5}.value</name>
|
224 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
225 |
|
|
</property>
|
226 |
|
|
<property>
|
227 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out5}.format</name>
|
228 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
229 |
|
|
</property>
|
230 |
|
|
<!-- datasourceLanguage -->
|
231 |
|
|
<property>
|
232 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out6}.key</name>
|
233 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
234 |
|
|
</property>
|
235 |
|
|
<property>
|
236 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out6}.value</name>
|
237 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
238 |
|
|
</property>
|
239 |
|
|
<property>
|
240 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out6}.format</name>
|
241 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
242 |
|
|
</property>
|
243 |
|
|
|
244 |
|
|
<!-- projectOrganization -->
|
245 |
|
|
<property>
|
246 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out7}.key</name>
|
247 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
248 |
|
|
</property>
|
249 |
|
|
<property>
|
250 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out7}.value</name>
|
251 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
252 |
|
|
</property>
|
253 |
|
|
<property>
|
254 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out7}.format</name>
|
255 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
256 |
|
|
</property>
|
257 |
|
|
<!-- resultClaim -->
|
258 |
|
|
<property>
|
259 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out8}.key</name>
|
260 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
261 |
|
|
</property>
|
262 |
|
|
<property>
|
263 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out8}.value</name>
|
264 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
265 |
|
|
</property>
|
266 |
|
|
<property>
|
267 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out8}.format</name>
|
268 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
269 |
|
|
</property>
|
270 |
|
|
|
271 |
|
|
<!-- resultClassification -->
|
272 |
|
|
<property>
|
273 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out9}.key</name>
|
274 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
275 |
|
|
</property>
|
276 |
|
|
<property>
|
277 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out9}.value</name>
|
278 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
279 |
|
|
</property>
|
280 |
|
|
<property>
|
281 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out9}.format</name>
|
282 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
283 |
|
|
</property>
|
284 |
|
|
|
285 |
|
|
<!-- resultConcept -->
|
286 |
|
|
<property>
|
287 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out10}.key</name>
|
288 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
289 |
|
|
</property>
|
290 |
|
|
<property>
|
291 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out10}.value</name>
|
292 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
293 |
|
|
</property>
|
294 |
|
|
<property>
|
295 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out10}.format</name>
|
296 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
297 |
|
|
</property>
|
298 |
|
|
|
299 |
|
|
<!-- resultLanguage -->
|
300 |
|
|
<property>
|
301 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out11}.key</name>
|
302 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
303 |
|
|
</property>
|
304 |
|
|
<property>
|
305 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out11}.value</name>
|
306 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
307 |
|
|
</property>
|
308 |
|
|
<property>
|
309 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out11}.format</name>
|
310 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
311 |
|
|
</property>
|
312 |
|
|
|
313 |
|
|
<!-- resultOrganization -->
|
314 |
|
|
<property>
|
315 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out12}.key</name>
|
316 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
317 |
|
|
</property>
|
318 |
|
|
<property>
|
319 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out12}.value</name>
|
320 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
321 |
|
|
</property>
|
322 |
|
|
<property>
|
323 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out12}.format</name>
|
324 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
325 |
|
|
</property>
|
326 |
|
|
|
327 |
|
|
<!-- resultResult -->
|
328 |
|
|
<property>
|
329 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out13}.key</name>
|
330 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
331 |
|
|
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<!-- person -->
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39902
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eri.katsar
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42742
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<property>
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<property>
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<!-- datasourceOid-->
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<property>
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<!--personOid-->
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|
|
<value>org.apache.hadoop.io.Text</value>
|
670 |
|
|
</property>
|
671 |
|
|
<property>
|
672 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out36}.format</name>
|
673 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
674 |
|
|
</property>
|
675 |
|
|
|
676 |
|
|
<!--result-->
|
677 |
|
|
|
678 |
|
|
<property>
|
679 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out37}.key</name>
|
680 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
681 |
|
|
</property>
|
682 |
|
|
<property>
|
683 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out37}.value</name>
|
684 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
685 |
|
|
</property>
|
686 |
|
|
<property>
|
687 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out37}.format</name>
|
688 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
689 |
|
|
</property>
|
690 |
|
|
|
691 |
|
|
<!--resultDescription-->
|
692 |
|
|
|
693 |
|
|
<property>
|
694 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out38}.key</name>
|
695 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
696 |
|
|
</property>
|
697 |
|
|
<property>
|
698 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out38}.value</name>
|
699 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
700 |
|
|
</property>
|
701 |
|
|
<property>
|
702 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out38}.format</name>
|
703 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
704 |
|
|
</property>
|
705 |
|
|
|
706 |
|
|
|
707 |
|
|
<!--orgOrg-->
|
708 |
|
|
|
709 |
|
|
<property>
|
710 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out39}.key</name>
|
711 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
712 |
|
|
</property>
|
713 |
|
|
<property>
|
714 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out39}.value</name>
|
715 |
|
|
<value>org.apache.hadoop.io.Text</value>
|
716 |
|
|
</property>
|
717 |
|
|
<property>
|
718 |
|
|
<name>mapreduce.multipleoutputs.namedOutput.${out39}.format</name>
|
719 |
|
|
<value>org.apache.hadoop.mapreduce.lib.output.TextOutputFormat</value>
|
720 |
|
|
</property>
|
721 |
|
|
|
722 |
|
|
|
723 |
39902
|
eri.katsar
|
<!-- ## Classes of mapper and reducer -->
|
724 |
|
|
|
725 |
42742
|
eri.katsar
|
<property>
|
726 |
|
|
<name>mapreduce.map.class</name>
|
727 |
|
|
<value>eu.dnetlib.data.mapreduce.hbase.statsExport.mapreduce.StatsMapper</value>
|
728 |
|
|
</property>
|
729 |
|
|
<property>
|
730 |
|
|
<name>mapreduce.reduce.class</name>
|
731 |
|
|
<value>eu.dnetlib.data.mapreduce.hbase.statsExport.mapreduce.StatsReducer</value>
|
732 |
|
|
</property>
|
733 |
|
|
<property>
|
734 |
|
|
<name>io.serializations</name>
|
735 |
|
|
<value>org.apache.hadoop.io.serializer.WritableSerialization</value>
|
736 |
|
|
</property>
|
737 |
39902
|
eri.katsar
|
|
738 |
42742
|
eri.katsar
|
<!-- ## Custom config -->
|
739 |
39902
|
eri.katsar
|
|
740 |
42742
|
eri.katsar
|
<!--delim character used to seperate fields in hdfs dump files <property> -->
|
741 |
|
|
<property>
|
742 |
|
|
<name>stats.delim</name>
|
743 |
|
|
<value>${Stats_delim_Character}</value>
|
744 |
|
|
</property>
|
745 |
|
|
<!--default string for Null String Values -->
|
746 |
|
|
<property>
|
747 |
|
|
<name>stats.nullString</name>
|
748 |
|
|
<value>${Stats_null_String_Field}</value>
|
749 |
|
|
</property>
|
750 |
|
|
<!--default string for Null Numeric Values -->
|
751 |
|
|
<property>
|
752 |
|
|
<name>stats.nullNum</name>
|
753 |
|
|
<value>${Stats_null_Numeric_Field}</value>
|
754 |
|
|
</property>
|
755 |
39902
|
eri.katsar
|
|
756 |
42742
|
eri.katsar
|
<property>
|
757 |
|
|
<name>stats.enclChar</name>
|
758 |
|
|
<value>${Stats_enclosing_Character}</value>
|
759 |
|
|
</property>
|
760 |
39902
|
eri.katsar
|
|
761 |
42742
|
eri.katsar
|
<property>
|
762 |
|
|
<name>stats.getDeletedByInf</name>
|
763 |
|
|
<value>${Stats_getdeletedbyinference}</value>
|
764 |
|
|
</property>
|
765 |
39902
|
eri.katsar
|
|
766 |
42742
|
eri.katsar
|
<!--
|
767 |
|
|
<property>
|
768 |
|
|
<name>stats.mergedPass</name>
|
769 |
|
|
<value>${Stats_db_Merged_Pass}</value>
|
770 |
|
|
</property>
|
771 |
|
|
|
772 |
|
|
|
773 |
|
|
<property>
|
774 |
|
|
<name>stats.mergeduser</name>
|
775 |
|
|
<value>${Stats_db_Merged_User}</value>
|
776 |
|
|
</property>-->
|
777 |
|
|
|
778 |
|
|
|
779 |
|
|
<!--source hbase table -->
|
780 |
|
|
<property>
|
781 |
|
|
<name>hbase.mapreduce.inputtable</name>
|
782 |
|
|
<value>${Stats_Hbase_Source_Table}</value>
|
783 |
|
|
</property>
|
784 |
|
|
<property>
|
785 |
|
|
<name>hbase.mapred.inputtable</name>
|
786 |
|
|
<value>${Stats_Hbase_Source_Table}</value>
|
787 |
|
|
</property>
|
788 |
|
|
|
789 |
|
|
<property>
|
790 |
|
|
<!-- mapping of protos entities to tables in the relDB -->
|
791 |
|
|
<name>stats.dbTablesMap</name>
|
792 |
|
|
<value>${Stats_db_table_map}</value>
|
793 |
|
|
</property>
|
794 |
|
|
|
795 |
|
|
<!-- This directory does not correspond to a data store. In fact, this directory only
|
796 |
|
|
contains multiple data stores. It has to be set to the name of the workflow node.
|
797 |
|
|
-->
|
798 |
|
|
<property>
|
799 |
|
|
<name>mapred.output.dir</name>
|
800 |
|
|
<value>${Stats_output_Path}</value>
|
801 |
|
|
</property>
|
802 |
|
|
<property>
|
803 |
|
|
<name>stats.indexConf</name>
|
804 |
|
|
<value>${Stats_indexConf}</value>
|
805 |
|
|
</property>
|
806 |
|
|
<!-- ## Workflow node parameters -->
|
807 |
|
|
<property>
|
808 |
|
|
<name>mapred.reduce.tasks</name>
|
809 |
|
|
<value>${numReducers}</value>
|
810 |
|
|
</property>
|
811 |
|
|
|
812 |
|
|
</configuration>
|
813 |
|
|
</map-reduce>
|
814 |
|
|
<ok to="exportContext"/>
|
815 |
|
|
|
816 |
|
|
<error to="fail"/>
|
817 |
|
|
</action>
|
818 |
|
|
|
819 |
|
|
<action name='exportContext'>
|
820 |
39902
|
eri.katsar
|
<java>
|
821 |
|
|
<prepare>
|
822 |
|
|
</prepare>
|
823 |
|
|
<configuration>
|
824 |
|
|
<property>
|
825 |
|
|
<name>mapred.job.queue.name</name>
|
826 |
|
|
<value>${queueName}</value>
|
827 |
|
|
</property>
|
828 |
|
|
</configuration>
|
829 |
42742
|
eri.katsar
|
<main-class>eu.dnetlib.iis.core.workflows.stats.ContextExportWrapper</main-class>
|
830 |
39902
|
eri.katsar
|
|
831 |
42742
|
eri.katsar
|
<arg>${Stats_output_Path}</arg>
|
832 |
|
|
<arg>${isLookupEndpoint}</arg>
|
833 |
|
|
</java>
|
834 |
55645
|
antonis.le
|
<ok to="sqoopImport"/>
|
835 |
42742
|
eri.katsar
|
|
836 |
|
|
<error to="fail"/>
|
837 |
|
|
</action>
|
838 |
|
|
|
839 |
|
|
<action name="sqoopImport">
|
840 |
|
|
<java>
|
841 |
|
|
<prepare>
|
842 |
|
|
</prepare>
|
843 |
|
|
<configuration>
|
844 |
|
|
<property>
|
845 |
|
|
<name>mapred.job.queue.name</name>
|
846 |
|
|
<value>${queueName}</value>
|
847 |
|
|
</property>
|
848 |
|
|
|
849 |
|
|
<property>
|
850 |
|
|
<name>oozie.sqoop.log.level</name>
|
851 |
|
|
<value>DEBUG</value>
|
852 |
|
|
</property>
|
853 |
|
|
|
854 |
|
|
</configuration>
|
855 |
|
|
|
856 |
|
|
<main-class>eu.dnetlib.iis.core.java.ProcessWrapper</main-class>
|
857 |
|
|
<arg>-SworkingDir=${workingDir}</arg>
|
858 |
|
|
<arg>eu.dnetlib.iis.core.workflows.stats.SqoopWrapper</arg>
|
859 |
|
|
<arg>-PStats_db_Url=${Stats_db_Url}</arg>
|
860 |
|
|
<arg>-PStats_db_User=${Stats_db_User}</arg>
|
861 |
|
|
<arg>-PStats_db_Pass=${Stats_db_Pass}</arg>
|
862 |
|
|
<arg>-PStats_output_Path=${Stats_output_Path}</arg>
|
863 |
|
|
<arg>-PStats_sqoop_RecsPerStatement=${Stats_sqoop_RecsPerStatement}</arg>
|
864 |
|
|
<arg>-PStats_sqoop_ReducersCount=${Stats_sqoop_ReducersCount}</arg>
|
865 |
|
|
<arg>-PStats_sqoop_StatementPerTrans=${Stats_sqoop_StatementPerTrans}</arg>
|
866 |
|
|
<arg>-PStats_delim_Character=${Stats_delim_Character}</arg>
|
867 |
|
|
<arg>-PStats_db_table_map=${Stats_db_table_map}</arg>
|
868 |
|
|
<arg>-PStats_enclosing_Character=${Stats_enclosing_Character}</arg>
|
869 |
|
|
|
870 |
|
|
</java>
|
871 |
|
|
<ok to="finalizeDatabase"/>
|
872 |
|
|
|
873 |
|
|
|
874 |
|
|
<error to="fail"/>
|
875 |
|
|
</action>
|
876 |
|
|
|
877 |
45949
|
tsampikos.
|
<action name="finalizeDatabase">
|
878 |
|
|
<java>
|
879 |
|
|
<prepare>
|
880 |
|
|
</prepare>
|
881 |
|
|
<configuration>
|
882 |
|
|
<property>
|
883 |
|
|
<name>mapred.job.queue.name</name>
|
884 |
|
|
<value>${queueName}</value>
|
885 |
|
|
</property>
|
886 |
|
|
</configuration>
|
887 |
|
|
|
888 |
|
|
<main-class>eu.dnetlib.iis.core.java.ProcessWrapper</main-class>
|
889 |
|
|
<arg>-SworkingDir=${workingDir}</arg>
|
890 |
|
|
<arg>eu.dnetlib.iis.core.workflows.stats.DBFinalizeWrapper</arg>
|
891 |
|
|
<arg>-PStats_db_Url=${Stats_db_Url}</arg>
|
892 |
|
|
<arg>-PStats_db_User=${Stats_db_User}</arg>
|
893 |
|
|
<arg>-PStats_db_Pass=${Stats_db_Pass}</arg>
|
894 |
|
|
<arg>-PStats_db_Driver=${Stats_db_Driver}</arg>
|
895 |
|
|
</java>
|
896 |
|
|
<ok to="exportUsageStats"/>
|
897 |
|
|
<error to="fail"/>
|
898 |
|
|
</action>
|
899 |
|
|
|
900 |
42742
|
eri.katsar
|
<action name='exportUsageStats'>
|
901 |
|
|
<java>
|
902 |
|
|
<prepare>
|
903 |
45949
|
tsampikos.
|
<delete path="${nameNode}${piwik_logsPath}"/>
|
904 |
|
|
<mkdir path="${nameNode}${piwik_logsPath}"/>
|
905 |
42742
|
eri.katsar
|
</prepare>
|
906 |
|
|
<configuration>
|
907 |
|
|
<property>
|
908 |
|
|
<name>mapred.job.queue.name</name>
|
909 |
|
|
<value>${queueName}</value>
|
910 |
|
|
</property>
|
911 |
|
|
|
912 |
|
|
<property>
|
913 |
|
|
<name>oozie.sqoop.log.level</name>
|
914 |
|
|
<value>DEBUG</value>
|
915 |
|
|
</property>
|
916 |
|
|
</configuration>
|
917 |
|
|
|
918 |
|
|
<main-class>eu.dnetlib.iis.core.java.ProcessWrapper</main-class>
|
919 |
|
|
<arg>-SworkingDir=${workingDir}</arg>
|
920 |
|
|
<arg>eu.dnetlib.iis.core.workflows.stats.UsageStatsWrapper</arg>
|
921 |
|
|
<arg>-Ppiwik_username=${piwik_username}</arg>
|
922 |
|
|
<arg>-Ppiwik_pass=${piwik_pass}</arg>
|
923 |
|
|
<arg>-Ppiwik_httpProtocol=${piwik_httpProtocol}</arg>
|
924 |
|
|
<arg>-Ppiwik_url=${piwik_url}</arg>
|
925 |
|
|
<arg>-Ppiwik_siteId=${piwik_siteId}</arg>
|
926 |
|
|
<arg>-Ppiwik_startDate=${piwik_startDate}</arg>
|
927 |
|
|
<arg>-Ppiwik_finalDate=${piwik_finalDate}</arg>
|
928 |
|
|
<arg>-Ppiwik_logsPath=${piwik_logsPath}</arg>
|
929 |
|
|
<arg>-Ppiwik_filterOffset=${piwik_filterOffset}</arg>
|
930 |
|
|
<arg>-Ppiwiki_schema=${piwiki_schema}</arg>
|
931 |
|
|
<arg>-PStats_db_Url=${Stats_db_Url}</arg>
|
932 |
|
|
<arg>-PStats_db_User=${Stats_db_User}</arg>
|
933 |
|
|
<arg>-PStats_db_Pass=${Stats_db_Pass}</arg>
|
934 |
46169
|
tsampikos.
|
<arg>-Ptoken_auth=${token_auth}</arg>
|
935 |
42742
|
eri.katsar
|
|
936 |
46169
|
tsampikos.
|
<!--
|
937 |
43588
|
tsampikos.
|
<arg>-Pirus_baseuRL=${irus_baseuRL}</arg>
|
938 |
|
|
<arg>-Pirus_reportType=${irus_reportType}</arg>
|
939 |
|
|
<arg>-Pirus_release=${irus_release}</arg>
|
940 |
|
|
<arg>-Pirus_requestorid=${irus_requestorid}</arg>
|
941 |
|
|
<arg>-Pirus_repositoryid=${irus_repositoryid}</arg>
|
942 |
|
|
<arg>-Pirus_period_granularity=${irus_period_granularity}</arg>
|
943 |
|
|
<arg>-Pirus_period=${irus_period}</arg>
|
944 |
|
|
<arg>-Pirus_token_auth=${irus_token_auth}</arg>
|
945 |
46169
|
tsampikos.
|
-->
|
946 |
42742
|
eri.katsar
|
|
947 |
43588
|
tsampikos.
|
|
948 |
42742
|
eri.katsar
|
</java>
|
949 |
|
|
|
950 |
|
|
<ok to="cleanUpHDFS"/>
|
951 |
|
|
<error to="fail"/>
|
952 |
|
|
</action>
|
953 |
|
|
|
954 |
|
|
|
955 |
|
|
<action name="cleanUpHDFS">
|
956 |
|
|
<fs>
|
957 |
|
|
|
958 |
|
|
<delete path="${nameNode}${Stats_output_Path}"/>
|
959 |
45949
|
tsampikos.
|
<delete path="${nameNode}${piwik_logsPath}"/>
|
960 |
|
|
|
961 |
42742
|
eri.katsar
|
</fs>
|
962 |
|
|
<ok to="end"/>
|
963 |
|
|
<error to="fail"/>
|
964 |
|
|
</action>
|
965 |
|
|
<kill name="fail">
|
966 |
|
|
<message>
|
967 |
|
|
Unfortunately, the process failed -- error message: [${wf:errorMessage(wf:lastErrorNode())}]
|
968 |
|
|
</message>
|
969 |
|
|
</kill>
|
970 |
|
|
<end name="end"/>
|
971 |
39902
|
eri.katsar
|
</workflow-app>
|