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Revision 55977

Added by Alessia Bardi almost 5 years ago

Ignore failing test

View differences:

modules/dnet-mapreduce-jobs/trunk/src/test/java/eu/dnetlib/data/mapreduce/hbase/bulktag/ResultTaggerTest.java
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package eu.dnetlib.data.mapreduce.hbase.bulktag;
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import java.io.IOException;


  		




  
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import java.util.HashSet;


  		




  
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import java.util.List;


  		




  
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import java.util.Set;


  		




  
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import java.util.stream.Collectors;


  		




  
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import com.googlecode.protobuf.format.JsonFormat;


  		




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import eu.dnetlib.data.bulktag.CommunityConfiguration;


  		




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import eu.dnetlib.data.bulktag.CommunityConfigurationFactory;


  		




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import org.apache.hadoop.mapreduce.Mapper;


  		




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import org.dom4j.DocumentException;


  		




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import org.junit.Before;


  		




  
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import org.junit.Ignore;


  		




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import org.junit.Test;


  		




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import org.junit.runner.RunWith;


  		




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import org.mockito.Mock;


  		




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import org.mockito.junit.MockitoJUnitRunner;


  		




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import java.io.IOException;


  		




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import java.util.HashSet;


  		




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import java.util.List;


  		




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import java.util.Set;


  		




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import java.util.stream.Collectors;


  		




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import static org.junit.Assert.*;


  		




  
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import static org.mockito.Mockito.anyString;


  		




  
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import static org.mockito.Mockito.when;


  		




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import static org.mockito.Mockito.*;


  		




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/**


  		




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 * Created by miriam on 02/08/2018.


  		




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 */


  		




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@RunWith(MockitoJUnitRunner.class)


  		




  
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@Ignore


  		




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public class ResultTaggerTest {


  		




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    private String xml;


  		












  

    
      modules/dnet-mapreduce-jobs/trunk/src/test/resources/eu/dnetlib/data/transform/biotoolSw.xml
    
  





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	            xmlns:dri="http://www.driver-repository.eu/namespace/dri"


  		




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	            xmlns:oai="http://www.openarchives.org/OAI/2.0/"


  		




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	            xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">


  		




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		<dri:objIdentifier>__bioTools__::11d470df182ec6799ccb3db3e0efe2db</dri:objIdentifier>


  		




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		<dri:recordIdentifier>propsearch</dri:recordIdentifier>


  		




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		<dri:dateOfCollection>2019-04-30T15:13:42.868Z</dri:dateOfCollection>


  		




  
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		<dri:objIdentifier>__bioTools__::001321907fcc9f8d020f05230f9d3ddf</dri:objIdentifier>


  		




  
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		<dri:recordIdentifier>chainy</dri:recordIdentifier>


  		




  
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		<dri:dateOfCollection>2019-05-27T12:07:23.214Z</dri:dateOfCollection>


  		




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		<oaf:datasourceprefix>__bioTools__</oaf:datasourceprefix>


  		




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		<dr:dateOfTransformation>2019-04-30T15:18:19.912Z</dr:dateOfTransformation>


  		




  
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		<dr:dateOfTransformation>2019-05-27T12:11:58.32Z</dr:dateOfTransformation>


  		




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	</oai:header>


  		




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	<metadata>


  		




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		<datacite:resource>


  		




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			<datacite:resourceType resourceTypeGeneral="Software">Web application</datacite:resourceType>


  		




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			<datacite:publisher>bio.tools</datacite:publisher>


  		




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			<datacite:relatedIdentifiers>


  		




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				<datacite:relatedIdentifier relatedIdentifierType="URL" relationType="IsDocumentedBy">http://abcis.cbs.cnrs.fr/propsearch/</datacite:relatedIdentifier>


  		




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				<datacite:relatedIdentifier relatedIdentifierType="DOI" relationType="isSupplementTo">10.1006/jmbi.1995.0442</datacite:relatedIdentifier>


  		




  
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				<datacite:relatedIdentifier relatedIdentifierType="URL" relationType="IsDocumentedBy">http://maplab.imppc.org/chainy/</datacite:relatedIdentifier>


  		




  
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				<datacite:relatedIdentifier relatedIdentifierType="DOI" relationType="isReferencedBy">10.1093/bioinformatics/btw839</datacite:relatedIdentifier>


  		




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			</datacite:relatedIdentifiers>


  		




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			<datacite:alternateIdentifiers>


  		




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				<datacite:alternateIdentifier alternateIdentifierType="LandingPage">https://bio.tools/propsearch</datacite:alternateIdentifier>


  		




  
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				<datacite:alternateIdentifier alternateIdentifierType="LandingPage">https://bio.tools/chainy</datacite:alternateIdentifier>


  		




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			</datacite:alternateIdentifiers>


  		




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			<datacite:identifier identifierType="URL">https://bio.tools/propsearch</datacite:identifier>


  		




  
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			<datacite:identifier identifierType="URL">https://bio.tools/chainy</datacite:identifier>


  		




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			<datacite:titles>


  		




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				<datacite:title>PROPSEARCH</datacite:title>


  		




  
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				<datacite:title>Chainy</datacite:title>


  		




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			</datacite:titles>


  		




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			<creators>


  		




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				<creator>


  		




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					<creatorName>Hobohm, Uwe</creatorName>


  		




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					<givenName>Uwe</givenName>


  		




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					<familyName>Hobohm</familyName>


  		




  
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					<creatorName>Mallona, Izaskun</creatorName>


  		




  
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					<givenName>Izaskun</givenName>


  		




  
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					<familyName>Mallona</familyName>


  		




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				</creator>


  		




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			</creators>


  		




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			<datacite:contributors/>


  		




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			<datacite:descriptions>


  		




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				<datacite:description descriptionType="Abstract">PROPSEARCH was designed to detect functional and / or structural homologs, if the sequence identity is below about 25%. It uses the amino acid physico-chemical properties, content of bulky residues, content of small residues, average hydrophobicity, average charge a.s.o. and are used as query vector. Sequences in the database are transformed into vectors as well, and the euclidian distance between the query and database sequences is calculated.</datacite:description>


  		




  
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				<datacite:description descriptionType="Abstract">Universal tool for standardized relative quantification in real-time PCR.</datacite:description>


  		




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				<datacite:description descriptionType="TechnicalInfo">Linux</datacite:description>


  		




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				<datacite:description descriptionType="TechnicalInfo">Windows</datacite:description>


  		




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				<datacite:description descriptionType="TechnicalInfo">Mac</datacite:description>


  		




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			</datacite:descriptions>


  		




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			<datacite:subjects>


  		




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				<datacite:subject schemeURI="http://edamontology.org"


  		




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				                  subjectScheme="EDAM Ontology" valueURI="http://edamontology.org/topic_1775">Function analysis</datacite:subject>


  		




  
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				                  subjectScheme="EDAM Ontology" valueURI="http://edamontology.org/topic_3519">PCR experiment</datacite:subject>


  		




  
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				<datacite:subject schemeURI="http://edamontology.org"


  		




  
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				                  subjectScheme="EDAM Ontology" valueURI="http://edamontology.org/topic_0203">Gene expression</datacite:subject>


  		




  
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				<datacite:subject schemeURI="http://edamontology.org"


  		




  
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				                  subjectScheme="EDAM Ontology" valueURI="http://edamontology.org/topic_3534">Protein binding sites</datacite:subject>


  		




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			</datacite:subjects>


  		




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		</datacite:resource>


  		




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		<dr:CobjCategory type="software">0029</dr:CobjCategory>


  		




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		<oaf:hostedBy id="rest________::bioTools" name="bio.tools"/>


  		




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		<oaf:collectedFrom id="rest________::bioTools" name="bio.tools"/>


  		




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		<oaf:dateAccepted>2017-12-06</oaf:dateAccepted>


  		




  
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		<oaf:dateAccepted>2018-06-06</oaf:dateAccepted>


  		




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	</metadata>


  		




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	<about xmlns:dc="http://purl.org/dc/elements/1.1/"


  		




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	       xmlns:dri="http://www.driver-repository.eu/namespace/dri"


  		




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	       xmlns:oai="http://www.openarchives.org/OAI/2.0/"


  		




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	       xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">


  		




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		<provenance xmlns="http://www.openarchives.org/OAI/2.0/provenance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/provenance http://www.openarchives.org/OAI/2.0/provenance.xsd">


  		




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			<originDescription altered="true" harvestDate="2019-04-30T15:13:42.868Z">


  		




  
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			<originDescription altered="true" harvestDate="2019-05-27T12:07:23.214Z">


  		




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				<baseURL>https://bio.tools/api/tool</baseURL>


  		




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				<identifier/>


  		




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				<datestamp/>


  		












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