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package eu.dnetlib.data.mapreduce.hbase.statsExport.utils;
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eri.katsar
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import com.google.common.collect.Multimap;
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tsampikos.
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import eu.dnetlib.data.mapreduce.util.LicenseComparator;
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import eu.dnetlib.data.proto.DatasourceProtos.Datasource;
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import eu.dnetlib.data.proto.DatasourceProtos.Datasource.Metadata;
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34194
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eri.katsar
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import eu.dnetlib.data.proto.FieldTypeProtos;
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29712
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eri.katsar
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import eu.dnetlib.data.proto.FieldTypeProtos.Qualifier;
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import eu.dnetlib.data.proto.FieldTypeProtos.StringField;
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import eu.dnetlib.data.proto.FieldTypeProtos.StructuredProperty;
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import eu.dnetlib.data.proto.OafProtos.Oaf;
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import eu.dnetlib.data.proto.OafProtos.OafEntity;
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import eu.dnetlib.data.proto.OafProtos.OafRel;
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import eu.dnetlib.data.proto.OrganizationProtos.Organization;
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import eu.dnetlib.data.proto.ProjectProtos.Project;
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import eu.dnetlib.data.proto.RelTypeProtos.RelType;
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import eu.dnetlib.data.proto.ResultProtos.Result;
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import eu.dnetlib.data.proto.ResultProtos.Result.Instance;
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import org.apache.log4j.Logger;
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import java.text.DateFormat;
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import java.text.ParseException;
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import java.text.SimpleDateFormat;
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import java.util.Date;
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import java.util.List;
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import org.w3c.dom.Element;
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import org.w3c.dom.NodeList;
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import org.xml.sax.InputSource;
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import com.sun.org.apache.xerces.internal.parsers.DOMParser;
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import org.w3c.dom.Document;
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/**
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* @author eri Simple serializer that parses input Oaf Protos and prepares them
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* for sqoop
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*/
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public class Serializer {
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private static Logger logger = Logger.getLogger(Serializer.class);
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private String DELIM;
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private String ENCLOSING;
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public Serializer(String DELIM, String ENCLOSING) {
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this.DELIM = DELIM;
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this.ENCLOSING = ENCLOSING;
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}
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public String serialize(Oaf oaf) {
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switch (oaf.getKind()) {
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case entity:
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OafEntity valueEntity = oaf.getEntity();
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switch (valueEntity.getType()) {
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case datasource:
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return buildDatasource(oaf);
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case organization:
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return buildOrganization(oaf);
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case project:
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return buildProject(oaf);
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case result:
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return buildResult(oaf);
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default:
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break;
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}
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break;
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case relation:
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return buildRel(oaf.getRel());
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}
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return null;
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}
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public String serialize(OafRel oaf) {
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switch (oaf.getRelType()) {
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case resultProject:
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return getResultProject(oaf);
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default:
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return buildRel(oaf);
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}
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}
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private String buildRel(OafRel Rel) {
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return cleanId(Rel.getTarget()) + DELIM;
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}
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public void extractRelations(Oaf oaf, Multimap<String, String> relations) {
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OafEntity valueEntity = oaf.getEntity();
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getOriginalId(valueEntity, relations);
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switch (valueEntity.getType()) {
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case datasource:
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getDatasourceLanguages(valueEntity, relations);
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break;
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case result:
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getResultTopics(valueEntity, relations);
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getResultLanguages(valueEntity, relations);
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getResultClassifications(valueEntity, relations);
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getResultDatasources(valueEntity, relations);
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getResultConcepts(valueEntity, relations);
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getResultDois(valueEntity, relations);
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getResultCitations(valueEntity, relations);
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break;
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case project:
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getProjectKeywords(valueEntity, relations);
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getProjectSubjects(valueEntity, relations);
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break;
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}
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}
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private void getOriginalId(OafEntity oafEntity, Multimap<String, String> relations) {
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String relName = oafEntity.getType().toString().toLowerCase() + "Oid";
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for (String oid : oafEntity.getOriginalIdList()) {
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relations.put(relName, cleanId(oid));
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}
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}
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private void getProjectKeywords(OafEntity oafEntity, Multimap<String, String> relations) {
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relations.put("projectKeyword", getStringField(oafEntity.getProject().getMetadata().getKeywords().getValue()));
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}
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private void getProjectSubjects(OafEntity oafEntity, Multimap<String, String> relations) {
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for (StructuredProperty subj : oafEntity.getProject().getMetadata().getSubjectsList()) {
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relations.put("projectSubject", getStringField(subj.getValue()));
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}
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}
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private String getResultProject(OafRel oaf) {
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StringBuilder buff = new StringBuilder();
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buff.append(cleanId(oaf.getTarget())).append(DELIM);
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// is declared as int!!!
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long diff = DATEDIFF(oaf.getResultProject().getOutcome().getRelMetadata().getEnddate(), oaf.getResultProject().getOutcome().getRelMetadata().getStartdate());
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antonis.le
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if (diff < 0) {
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diff = 0;
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}
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buff.append(getNumericField(String.valueOf(diff)));
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return buff.toString();
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}
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antonis.le
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private void getDatasourceLanguages(OafEntity valueEntity, Multimap<String, String> rels) {
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| 157 |
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Datasource d = valueEntity.getDatasource();
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Metadata metadata = d.getMetadata();
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| 160 |
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for (StringField lang : metadata.getOdlanguagesList()) {
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| 161 |
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rels.put("datasourceLanguage", getStringField(lang.getValue()));
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}
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}
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| 165 |
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private void getResultLanguages(OafEntity valueEntity, Multimap<String, String> rels) {
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| 167 |
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Result d = valueEntity.getResult();
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| 168 |
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Result.Metadata metadata = d.getMetadata();
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| 169 |
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if (metadata.getLanguage().getClassname() != null && !metadata.getLanguage().getClassname().isEmpty()) {
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| 170 |
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rels.put("resultLanguage", getStringField(metadata.getLanguage().getClassname()));
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}
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| 173 |
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}
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| 175 |
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private void getResultDois(OafEntity valueEntity, Multimap<String, String> rels) {
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| 177 |
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for (StructuredProperty pid : valueEntity.getPidList()) {
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| 178 |
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rels.put("resultPid", getStringField(pid.getQualifier().getClassname()) + getStringField(pid.getValue()));
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| 179 |
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}
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| 180 |
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}
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| 181 |
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| 182 |
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antonis.le
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private void getResultClassifications(OafEntity valueEntity, Multimap<String, String> rels) {
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| 183 |
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| 184 |
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Result result = valueEntity.getResult();
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| 185 |
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| 186 |
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for (Instance instance : (result.getInstanceList())) {
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| 187 |
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String classification = instance.getInstancetype().getClassname();
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| 188 |
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antonis.le
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| 189 |
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if (classification != null && !classification.isEmpty()) {
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| 190 |
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rels.put("resultClassification", getStringField(instance.getInstancetype().getClassname()));
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| 191 |
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}
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| 192 |
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}
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| 193 |
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}
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| 194 |
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| 195 |
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private void getResultConcepts(OafEntity valueEntity, Multimap<String, String> rels) {
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| 196 |
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Result result = valueEntity.getResult();
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| 197 |
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| 198 |
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for (Result.Context context : result.getMetadata().getContextList()) {
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| 199 |
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rels.put("resultConcept", cleanId(context.getId()));
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| 200 |
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}
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| 201 |
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}
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| 202 |
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| 203 |
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private void getResultDatasources(OafEntity valueEntity, Multimap<String, String> rels) {
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| 204 |
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Result result = valueEntity.getResult();
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| 205 |
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|
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| 206 |
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|
// hosted by
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| 207 |
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|
for (Instance instance : (result.getInstanceList())) {
|
| 208 |
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String hostedBy = instance.getHostedby().getKey();
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| 209 |
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| 210 |
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if (hostedBy != null && !hostedBy.isEmpty()) {
|
| 211 |
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|
rels.put("resultDatasource", cleanId(hostedBy) + DELIM);
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| 212 |
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|
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|
}
|
| 213 |
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}
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| 214 |
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|
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| 215 |
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|
// collected from
|
| 216 |
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|
for (FieldTypeProtos.KeyValue collectedFromValue : (valueEntity.getCollectedfromList())) {
|
| 217 |
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String collectedFrom = collectedFromValue.getKey();
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| 218 |
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| 219 |
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if (collectedFrom != null && !collectedFrom.isEmpty()) {
|
| 220 |
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rels.put("resultDatasource", cleanId(collectedFrom) + DELIM);
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| 221 |
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}
|
| 222 |
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|
}
|
| 223 |
|
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}
|
| 224 |
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|
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|
| 225 |
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private void getResultTopics(OafEntity valueEntity, Multimap<String, String> rels) {
|
| 226 |
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|
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|
Result d = valueEntity.getResult();
|
| 227 |
|
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Result.Metadata metadata = d.getMetadata();
|
| 228 |
|
|
List<StructuredProperty> Topics = metadata.getSubjectList();
|
| 229 |
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|
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|
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| 230 |
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for (StructuredProperty topic : Topics) {
|
| 231 |
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|
rels.put("resultTopic", getStringField(topic.getValue()));
|
| 232 |
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|
}
|
| 233 |
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}
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| 234 |
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|
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|
|
| 235 |
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|
claudio.at
|
|
| 236 |
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|
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|
private void getResultCitations(OafEntity oafEntity, Multimap<String, String> rels) {
|
| 237 |
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|
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for (FieldTypeProtos.ExtraInfo extraInfo : oafEntity.getExtraInfoList()) {
|
| 238 |
|
|
if (extraInfo.getName().equals("result citations")) {
|
| 239 |
47072
|
tsampikos.
|
DOMParser parser = new DOMParser();
|
| 240 |
|
|
try {
|
| 241 |
|
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parser.parse(new InputSource(new java.io.StringReader(extraInfo.getValue())));
|
| 242 |
|
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Document doc = parser.getDocument();
|
| 243 |
|
|
doc.getDocumentElement().normalize();
|
| 244 |
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|
| 245 |
|
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NodeList citations = doc.getElementsByTagName("citation");
|
| 246 |
|
|
for (int temp = 0; temp < citations.getLength(); temp++) {
|
| 247 |
|
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Element citation = (Element) citations.item(temp);
|
| 248 |
|
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NodeList ids = citation.getElementsByTagName("id");
|
| 249 |
|
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for(int temp1 = 0; temp1 < ids.getLength(); temp1++){
|
| 250 |
|
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Element id = (Element) ids.item(temp1);
|
| 251 |
|
|
if(id.getAttribute("type").equals("openaire")){
|
| 252 |
|
|
//System.out.println(id.getAttribute("value"));
|
| 253 |
|
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rels.put("resultCitation", id.getAttribute("value"));
|
| 254 |
|
|
}
|
| 255 |
|
|
}
|
| 256 |
|
|
}
|
| 257 |
|
|
} catch (Exception e) {
|
| 258 |
56508
|
antonis.le
|
logger.error("Error getting result citations", e);
|
| 259 |
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|
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|
}
|
| 260 |
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|
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|
}
|
| 261 |
|
|
}
|
| 262 |
|
|
}
|
| 263 |
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|
claudio.at
|
|
| 264 |
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|
antonis.le
|
private String buildDatasource(Oaf oaf) {
|
| 265 |
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|
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|
Metadata metadata = oaf.getEntity().getDatasource().getMetadata();
|
| 266 |
|
|
StringBuilder buff = new StringBuilder();
|
| 267 |
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|
claudio.at
|
|
| 268 |
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eri.katsar
|
// name
|
| 269 |
|
|
if (metadata.getOfficialname().getValue().equalsIgnoreCase("unknown")) {
|
| 270 |
56504
|
antonis.le
|
buff.append(getStringField("Unknown Repository"));
|
| 271 |
41790
|
eri.katsar
|
} else {
|
| 272 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getOfficialname().getValue()));
|
| 273 |
41790
|
eri.katsar
|
}
|
| 274 |
54431
|
tsampikos.
|
|
| 275 |
41790
|
eri.katsar
|
// type
|
| 276 |
42734
|
eri.katsar
|
if (metadata.hasDatasourcetype()) {
|
| 277 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getDatasourcetype().getClassname().replaceFirst(".*::", "")));
|
| 278 |
41790
|
eri.katsar
|
}
|
| 279 |
27955
|
claudio.at
|
|
| 280 |
41790
|
eri.katsar
|
// compatibility,
|
| 281 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getOpenairecompatibility().getClassname()));
|
| 282 |
27955
|
claudio.at
|
|
| 283 |
55644
|
antonis.le
|
// latitude
|
| 284 |
56504
|
antonis.le
|
buff.append(getLatLongField(metadata.getLatitude().getValue()));
|
| 285 |
55644
|
antonis.le
|
|
| 286 |
|
|
// longtitude
|
| 287 |
56504
|
antonis.le
|
buff.append(getLatLongField(metadata.getLongitude().getValue()));
|
| 288 |
55644
|
antonis.le
|
|
| 289 |
41790
|
eri.katsar
|
// dateofvalidation,
|
| 290 |
56504
|
antonis.le
|
buff.append(getStringDateField(metadata.getDateofvalidation().getValue()));
|
| 291 |
27955
|
claudio.at
|
|
| 292 |
41790
|
eri.katsar
|
// yearofvalidation,
|
| 293 |
56504
|
antonis.le
|
buff.append(getYearInt(metadata.getDateofvalidation().getValue()));
|
| 294 |
27955
|
claudio.at
|
|
| 295 |
54431
|
tsampikos.
|
//harvested
|
| 296 |
56504
|
antonis.le
|
buff.append(getStringField("false"));
|
| 297 |
27955
|
claudio.at
|
|
| 298 |
45523
|
tsampikos.
|
//piwik_id
|
| 299 |
|
|
String piwik_id = "";
|
| 300 |
|
|
for (String oid : oaf.getEntity().getOriginalIdList()) {
|
| 301 |
|
|
if (oid.contains("piwik")) {
|
| 302 |
|
|
piwik_id = oid.split(":")[1];
|
| 303 |
|
|
break;
|
| 304 |
|
|
}
|
| 305 |
|
|
}
|
| 306 |
56504
|
antonis.le
|
buff.append(getStringField(cleanNumber(piwik_id)));
|
| 307 |
45523
|
tsampikos.
|
|
| 308 |
57521
|
antonis.le
|
buff.append(getStringField(metadata.getWebsiteurl().getValue()));
|
| 309 |
|
|
|
| 310 |
42734
|
eri.katsar
|
return buff.toString();
|
| 311 |
27955
|
claudio.at
|
|
| 312 |
41790
|
eri.katsar
|
}
|
| 313 |
27955
|
claudio.at
|
|
| 314 |
56504
|
antonis.le
|
private String buildOrganization(Oaf oaf) {
|
| 315 |
27955
|
claudio.at
|
|
| 316 |
42734
|
eri.katsar
|
StringBuilder buff = new StringBuilder();
|
| 317 |
|
|
Organization.Metadata metadata = oaf.getEntity().getOrganization().getMetadata();
|
| 318 |
27955
|
claudio.at
|
|
| 319 |
41790
|
eri.katsar
|
// `name`,
|
| 320 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getLegalname().getValue()));
|
| 321 |
42734
|
eri.katsar
|
|
| 322 |
41790
|
eri.katsar
|
// `country`,
|
| 323 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getCountry().getClassid()));
|
| 324 |
29323
|
eri.katsar
|
|
| 325 |
42734
|
eri.katsar
|
return buff.toString();
|
| 326 |
41790
|
eri.katsar
|
}
|
| 327 |
27955
|
claudio.at
|
|
| 328 |
56504
|
antonis.le
|
private String buildResult(Oaf oaf) {
|
| 329 |
42734
|
eri.katsar
|
StringBuilder buff = new StringBuilder();
|
| 330 |
27955
|
claudio.at
|
|
| 331 |
42734
|
eri.katsar
|
Result.Metadata metadata = oaf.getEntity().getResult().getMetadata();
|
| 332 |
27955
|
claudio.at
|
|
| 333 |
57521
|
antonis.le
|
// originalId
|
| 334 |
|
|
buff.append(getId(oaf)).append(DELIM);
|
| 335 |
|
|
|
| 336 |
56508
|
antonis.le
|
String titleString = "";
|
| 337 |
56483
|
antonis.le
|
|
| 338 |
56508
|
antonis.le
|
if (metadata.getTitleList().size() > 0) {
|
| 339 |
|
|
StructuredProperty title = metadata.getTitleList().get(0);
|
| 340 |
56483
|
antonis.le
|
|
| 341 |
56508
|
antonis.le
|
titleString = title.getValue().replaceAll("\\s+", " ");
|
| 342 |
|
|
titleString = titleString.replaceAll("\n", " ");
|
| 343 |
56483
|
antonis.le
|
}
|
| 344 |
|
|
|
| 345 |
|
|
// pubtitle
|
| 346 |
56504
|
antonis.le
|
buff.append(getStringField(titleString));
|
| 347 |
56483
|
antonis.le
|
|
| 348 |
42734
|
eri.katsar
|
// publisher
|
| 349 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getPublisher().getValue()));
|
| 350 |
42734
|
eri.katsar
|
|
| 351 |
|
|
// journal
|
| 352 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getJournal().getName())); //#null#!
|
| 353 |
42734
|
eri.katsar
|
|
| 354 |
41790
|
eri.katsar
|
// year
|
| 355 |
56504
|
antonis.le
|
buff.append(getYearInt(metadata.getDateofacceptance().getValue()));
|
| 356 |
27955
|
claudio.at
|
|
| 357 |
54431
|
tsampikos.
|
// date
|
| 358 |
56504
|
antonis.le
|
buff.append(getStringDateField(metadata.getDateofacceptance().getValue()));
|
| 359 |
29211
|
eri.katsar
|
|
| 360 |
41790
|
eri.katsar
|
// bestlicense
|
| 361 |
56504
|
antonis.le
|
buff.append(getStringField(getBestLicense(oaf.getEntity().getResult())));
|
| 362 |
29735
|
eri.katsar
|
|
| 363 |
41790
|
eri.katsar
|
// type
|
| 364 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getResulttype().getClassname()));
|
| 365 |
42734
|
eri.katsar
|
|
| 366 |
41790
|
eri.katsar
|
// embargo_end_date
|
| 367 |
56504
|
antonis.le
|
buff.append(getStringDateField(metadata.getEmbargoenddate().getValue()));
|
| 368 |
29637
|
eri.katsar
|
|
| 369 |
41790
|
eri.katsar
|
// `authors`,
|
| 370 |
54431
|
tsampikos.
|
int authors = metadata.getAuthorCount();
|
| 371 |
41790
|
eri.katsar
|
String delayed = "no";
|
| 372 |
27955
|
claudio.at
|
|
| 373 |
42734
|
eri.katsar
|
for (OafRel rel : oaf.getEntity().getCachedRelList()) {
|
| 374 |
48302
|
tsampikos.
|
if (rel.getRelType().equals(RelType.resultProject))
|
| 375 |
56505
|
antonis.le
|
// remember : in result Project, first id is project, second is result.
|
| 376 |
41790
|
eri.katsar
|
{
|
| 377 |
42734
|
eri.katsar
|
String daysfromend = getYearDifferenceInteger(rel.getResultProject().getOutcome().getRelMetadata().getEnddate(),
|
| 378 |
56504
|
antonis.le
|
rel.getResultProject().getOutcome().getRelMetadata().getStartdate());
|
| 379 |
41790
|
eri.katsar
|
if (Integer.parseInt(daysfromend) > 0) {
|
| 380 |
|
|
delayed = "yes";
|
| 381 |
|
|
}
|
| 382 |
|
|
}
|
| 383 |
|
|
}
|
| 384 |
42734
|
eri.katsar
|
|
| 385 |
41790
|
eri.katsar
|
// `delayed`,
|
| 386 |
56504
|
antonis.le
|
buff.append(getStringField(delayed));
|
| 387 |
42734
|
eri.katsar
|
//authors
|
| 388 |
56504
|
antonis.le
|
buff.append(getNumericField(String.valueOf(authors)));
|
| 389 |
29336
|
eri.katsar
|
|
| 390 |
57521
|
antonis.le
|
String authorNames = "";
|
| 391 |
|
|
for (FieldTypeProtos.Author author:metadata.getAuthorList()) {
|
| 392 |
|
|
authorNames += author.getFullname() + ";";
|
| 393 |
|
|
}
|
| 394 |
|
|
|
| 395 |
|
|
buff.append(getStringField(authorNames));
|
| 396 |
|
|
|
| 397 |
56508
|
antonis.le
|
String sources = "";
|
| 398 |
56483
|
antonis.le
|
|
| 399 |
|
|
for (Instance instance : (oaf.getEntity().getResult().getInstanceList())) {
|
| 400 |
|
|
List<String> urls = instance.getUrlList();
|
| 401 |
|
|
for (String url : urls) {
|
| 402 |
56504
|
antonis.le
|
sources += cleanUrl(url) + " ;";
|
| 403 |
56483
|
antonis.le
|
}
|
| 404 |
|
|
}
|
| 405 |
|
|
|
| 406 |
|
|
//sources
|
| 407 |
|
|
sources = ENCLOSING + sources + ENCLOSING + DELIM;
|
| 408 |
|
|
|
| 409 |
|
|
buff.append(sources);
|
| 410 |
|
|
|
| 411 |
57089
|
antonis.le
|
boolean hasAbstract = false;
|
| 412 |
|
|
for (StringField desc:metadata.getDescriptionList()) {
|
| 413 |
|
|
if (desc != null && desc.getValue() != null && !desc.getValue().trim().isEmpty())
|
| 414 |
|
|
hasAbstract = true;
|
| 415 |
|
|
}
|
| 416 |
|
|
|
| 417 |
|
|
buff.append(getStringField(Boolean.toString(hasAbstract)));
|
| 418 |
|
|
|
| 419 |
42734
|
eri.katsar
|
return buff.toString();
|
| 420 |
|
|
|
| 421 |
41790
|
eri.katsar
|
}
|
| 422 |
31183
|
eri.katsar
|
|
| 423 |
56504
|
antonis.le
|
private String getBestLicense(Result result) {
|
| 424 |
53034
|
tsampikos.
|
Qualifier bestLicense = null;
|
| 425 |
|
|
LicenseComparator lc = new LicenseComparator();
|
| 426 |
|
|
for (Instance instance : (result.getInstanceList())) {
|
| 427 |
50242
|
tsampikos.
|
if (lc.compare(bestLicense, instance.getAccessright()) > 0) {
|
| 428 |
|
|
bestLicense = instance.getAccessright();
|
| 429 |
41790
|
eri.katsar
|
}
|
| 430 |
|
|
}
|
| 431 |
|
|
if (bestLicense != null) {
|
| 432 |
|
|
return bestLicense.getClassname();
|
| 433 |
|
|
} else {
|
| 434 |
55644
|
antonis.le
|
return "";
|
| 435 |
41790
|
eri.katsar
|
}
|
| 436 |
|
|
}
|
| 437 |
27955
|
claudio.at
|
|
| 438 |
56504
|
antonis.le
|
private String buildProject(Oaf oaf) {
|
| 439 |
27955
|
claudio.at
|
|
| 440 |
56504
|
antonis.le
|
FundingParser fundingParser = new FundingParser(DELIM, ENCLOSING);
|
| 441 |
42734
|
eri.katsar
|
StringBuilder buff = new StringBuilder();
|
| 442 |
|
|
Project.Metadata metadata = oaf.getEntity().getProject().getMetadata();
|
| 443 |
43392
|
tsampikos.
|
|
| 444 |
41790
|
eri.katsar
|
// `acronym`,
|
| 445 |
|
|
String acronym = metadata.getAcronym().getValue();
|
| 446 |
|
|
if (acronym.equalsIgnoreCase("UNKNOWN")) {
|
| 447 |
|
|
acronym = metadata.getTitle().getValue();
|
| 448 |
|
|
}
|
| 449 |
56504
|
antonis.le
|
buff.append(getStringField(acronym));
|
| 450 |
31183
|
eri.katsar
|
|
| 451 |
54431
|
tsampikos.
|
//title
|
| 452 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getTitle().getValue()));
|
| 453 |
41790
|
eri.katsar
|
|
| 454 |
54431
|
tsampikos.
|
//funding_lvl
|
| 455 |
41790
|
eri.katsar
|
List<StringField> fundList = metadata.getFundingtreeList();
|
| 456 |
|
|
if (!fundList.isEmpty()) // `funding_lvl0`,
|
| 457 |
|
|
{
|
| 458 |
56505
|
antonis.le
|
//funder + 3 funding levels
|
| 459 |
56504
|
antonis.le
|
buff.append(fundingParser.getFundingInfo(fundList.get(0).getValue()));
|
| 460 |
41790
|
eri.katsar
|
} else {
|
| 461 |
56504
|
antonis.le
|
buff.append(fundingParser.getFundingInfo(""));
|
| 462 |
41790
|
eri.katsar
|
}
|
| 463 |
36995
|
eri.katsar
|
|
| 464 |
54431
|
tsampikos.
|
//sc39
|
| 465 |
56508
|
antonis.le
|
String sc39 = metadata.getEcsc39().getValue();
|
| 466 |
41790
|
eri.katsar
|
if (sc39.equalsIgnoreCase("true") || sc39.equalsIgnoreCase("t") || sc39.contains("yes")) {
|
| 467 |
|
|
sc39 = "yes";
|
| 468 |
|
|
} else if (sc39.equalsIgnoreCase("false") || sc39.equalsIgnoreCase("f") || sc39.contains("no")) {
|
| 469 |
|
|
sc39 = "no";
|
| 470 |
|
|
}
|
| 471 |
56504
|
antonis.le
|
buff.append(getStringField(sc39));
|
| 472 |
27955
|
claudio.at
|
|
| 473 |
45523
|
tsampikos.
|
//project_type
|
| 474 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getContracttype().getClassid()));
|
| 475 |
45523
|
tsampikos.
|
|
| 476 |
41790
|
eri.katsar
|
// start_year
|
| 477 |
56504
|
antonis.le
|
buff.append(getYearInt(metadata.getStartdate().getValue()));
|
| 478 |
27955
|
claudio.at
|
|
| 479 |
41790
|
eri.katsar
|
// end_year
|
| 480 |
56504
|
antonis.le
|
buff.append(getYearInt(metadata.getEnddate().getValue()));
|
| 481 |
27955
|
claudio.at
|
|
| 482 |
41790
|
eri.katsar
|
// duration enddate-startdate
|
| 483 |
56504
|
antonis.le
|
buff.append(getYearDifferenceInteger(metadata.getEnddate().getValue(), metadata.getStartdate().getValue()));
|
| 484 |
27955
|
claudio.at
|
|
| 485 |
41790
|
eri.katsar
|
// haspubs
|
| 486 |
56504
|
antonis.le
|
buff.append(getStringField("no"));
|
| 487 |
27955
|
claudio.at
|
|
| 488 |
41790
|
eri.katsar
|
// numpubs
|
| 489 |
56504
|
antonis.le
|
buff.append(getNumericField("0"));
|
| 490 |
42734
|
eri.katsar
|
|
| 491 |
41790
|
eri.katsar
|
// enddate
|
| 492 |
56504
|
antonis.le
|
buff.append(getStringDateField(metadata.getEnddate().getValue()));
|
| 493 |
42734
|
eri.katsar
|
|
| 494 |
41790
|
eri.katsar
|
// startdate
|
| 495 |
56504
|
antonis.le
|
buff.append(getStringDateField(metadata.getStartdate().getValue()));
|
| 496 |
27955
|
claudio.at
|
|
| 497 |
41790
|
eri.katsar
|
// `daysforlastpub`,
|
| 498 |
56504
|
antonis.le
|
buff.append(getNumericField(""));
|
| 499 |
42734
|
eri.katsar
|
|
| 500 |
41790
|
eri.katsar
|
// `delayedpubs`,
|
| 501 |
56504
|
antonis.le
|
buff.append(getNumericField(""));
|
| 502 |
42734
|
eri.katsar
|
|
| 503 |
|
|
//call identifier
|
| 504 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getCallidentifier().getValue()));
|
| 505 |
54431
|
tsampikos.
|
|
| 506 |
42734
|
eri.katsar
|
//code
|
| 507 |
56504
|
antonis.le
|
buff.append(getStringField(metadata.getCode().getValue()));
|
| 508 |
42734
|
eri.katsar
|
|
| 509 |
|
|
return buff.toString();
|
| 510 |
41790
|
eri.katsar
|
}
|
| 511 |
27955
|
claudio.at
|
|
| 512 |
|
|
|
| 513 |
56504
|
antonis.le
|
private String getYearDifferenceInteger(String enddate, String startdate) {
|
| 514 |
34202
|
eri.katsar
|
|
| 515 |
41790
|
eri.katsar
|
if (enddate != null && !enddate.isEmpty() && startdate != null && !startdate.isEmpty()) {
|
| 516 |
29754
|
eri.katsar
|
|
| 517 |
41790
|
eri.katsar
|
String[] split = startdate.split("-");
|
| 518 |
27955
|
claudio.at
|
|
| 519 |
56508
|
antonis.le
|
if (split.length == 0) {
|
| 520 |
42734
|
eri.katsar
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
| 521 |
41790
|
eri.katsar
|
}
|
| 522 |
27955
|
claudio.at
|
|
| 523 |
41790
|
eri.katsar
|
int Startdate = Integer.parseInt(split[0]);
|
| 524 |
27955
|
claudio.at
|
|
| 525 |
41790
|
eri.katsar
|
split = enddate.split("-");
|
| 526 |
27955
|
claudio.at
|
|
| 527 |
56508
|
antonis.le
|
if (split.length == 0) {
|
| 528 |
42734
|
eri.katsar
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
| 529 |
41790
|
eri.katsar
|
}
|
| 530 |
27955
|
claudio.at
|
|
| 531 |
41790
|
eri.katsar
|
int Enddate = Integer.parseInt(split[0]);
|
| 532 |
29211
|
eri.katsar
|
|
| 533 |
41790
|
eri.katsar
|
int diff = Enddate - Startdate;
|
| 534 |
29211
|
eri.katsar
|
|
| 535 |
42734
|
eri.katsar
|
return ENCLOSING + diff + ENCLOSING + DELIM;
|
| 536 |
29384
|
eri.katsar
|
|
| 537 |
41790
|
eri.katsar
|
}
|
| 538 |
31279
|
eri.katsar
|
|
| 539 |
42734
|
eri.katsar
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
| 540 |
41790
|
eri.katsar
|
}
|
| 541 |
29211
|
eri.katsar
|
|
| 542 |
56504
|
antonis.le
|
private String getYearInt(String data) {
|
| 543 |
41790
|
eri.katsar
|
if (data == null || data.isEmpty() || data.equals("-1")) {
|
| 544 |
42734
|
eri.katsar
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
| 545 |
41790
|
eri.katsar
|
}
|
| 546 |
27955
|
claudio.at
|
|
| 547 |
41790
|
eri.katsar
|
String[] split = data.split("-");
|
| 548 |
29384
|
eri.katsar
|
|
| 549 |
56508
|
antonis.le
|
if (split.length == 0) {
|
| 550 |
42734
|
eri.katsar
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
| 551 |
41790
|
eri.katsar
|
}
|
| 552 |
29336
|
eri.katsar
|
|
| 553 |
41790
|
eri.katsar
|
String year = split[0];
|
| 554 |
29336
|
eri.katsar
|
|
| 555 |
41790
|
eri.katsar
|
year = cleanNumber(year);
|
| 556 |
27955
|
claudio.at
|
|
| 557 |
42734
|
eri.katsar
|
if (year == null || year.isEmpty()) year = "0";
|
| 558 |
30977
|
eri.katsar
|
|
| 559 |
42734
|
eri.katsar
|
return ENCLOSING + year + ENCLOSING + DELIM;
|
| 560 |
27955
|
claudio.at
|
|
| 561 |
41790
|
eri.katsar
|
}
|
| 562 |
30043
|
eri.katsar
|
|
| 563 |
56504
|
antonis.le
|
private String cleanNumber(String number) {
|
| 564 |
56508
|
antonis.le
|
number = number.replaceAll("[^A-Za-z0-9:,_]", "");
|
| 565 |
41790
|
eri.katsar
|
return number;
|
| 566 |
|
|
}
|
| 567 |
30043
|
eri.katsar
|
|
| 568 |
56504
|
antonis.le
|
private String getLatLongField(String data) {
|
| 569 |
43739
|
tsampikos.
|
|
| 570 |
56504
|
antonis.le
|
if (data == null || data.isEmpty())
|
| 571 |
|
|
return ENCLOSING + "null" + ENCLOSING + DELIM;
|
| 572 |
43739
|
tsampikos.
|
|
| 573 |
|
|
return ENCLOSING + data.replaceAll("[^-0-9.]+", "") + ENCLOSING + DELIM;
|
| 574 |
|
|
|
| 575 |
|
|
}
|
| 576 |
|
|
|
| 577 |
56504
|
antonis.le
|
private String getStringField(String data) {
|
| 578 |
30977
|
eri.katsar
|
|
| 579 |
56504
|
antonis.le
|
if (data == null || data.isEmpty())
|
| 580 |
|
|
return ENCLOSING + "null" + ENCLOSING + DELIM;
|
| 581 |
27955
|
claudio.at
|
|
| 582 |
56504
|
antonis.le
|
return ENCLOSING + clean(data) + ENCLOSING + DELIM;
|
| 583 |
27955
|
claudio.at
|
|
| 584 |
41790
|
eri.katsar
|
}
|
| 585 |
27955
|
claudio.at
|
|
| 586 |
56504
|
antonis.le
|
private String getStringDateField(String data) {
|
| 587 |
56508
|
antonis.le
|
if (data == null || data.isEmpty() || data.equals("-1")) {
|
| 588 |
42734
|
eri.katsar
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
| 589 |
41790
|
eri.katsar
|
} else {
|
| 590 |
42734
|
eri.katsar
|
data = data.replace(DELIM, " ");
|
| 591 |
|
|
data = data.replace(ENCLOSING, " ");
|
| 592 |
53034
|
tsampikos.
|
data = data.replaceAll("\\r\\n|\\r|\\n", "");
|
| 593 |
54431
|
tsampikos.
|
try {
|
| 594 |
|
|
DateFormat format = new SimpleDateFormat("yyyy-MM-dd");
|
| 595 |
|
|
data = format.format(format.parse(data));
|
| 596 |
|
|
return ENCLOSING + data + ENCLOSING + DELIM;
|
| 597 |
|
|
} catch (ParseException e) {
|
| 598 |
|
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
| 599 |
|
|
}
|
| 600 |
41790
|
eri.katsar
|
}
|
| 601 |
|
|
}
|
| 602 |
27955
|
claudio.at
|
|
| 603 |
56504
|
antonis.le
|
private String getNumericField(String data) {
|
| 604 |
56508
|
antonis.le
|
if (data == null || data.isEmpty()) {
|
| 605 |
42734
|
eri.katsar
|
return ENCLOSING + "0" + ENCLOSING + DELIM;
|
| 606 |
41790
|
eri.katsar
|
} else {
|
| 607 |
42734
|
eri.katsar
|
return ENCLOSING + data + ENCLOSING + DELIM;
|
| 608 |
41790
|
eri.katsar
|
}
|
| 609 |
|
|
}
|
| 610 |
29634
|
eri.katsar
|
|
| 611 |
56504
|
antonis.le
|
public String getId(Oaf oaf) {
|
| 612 |
41790
|
eri.katsar
|
switch (oaf.getKind()) {
|
| 613 |
|
|
case entity:
|
| 614 |
56504
|
antonis.le
|
return cleanId(oaf.getEntity().getId());
|
| 615 |
41790
|
eri.katsar
|
case relation:
|
| 616 |
56504
|
antonis.le
|
return cleanId(oaf.getRel().getSource());
|
| 617 |
36689
|
eri.katsar
|
|
| 618 |
41790
|
eri.katsar
|
}
|
| 619 |
|
|
return null;
|
| 620 |
27955
|
claudio.at
|
|
| 621 |
41790
|
eri.katsar
|
}
|
| 622 |
27955
|
claudio.at
|
|
| 623 |
56504
|
antonis.le
|
public String getId(OafRel relOaf) {
|
| 624 |
|
|
return cleanId(relOaf.getSource());
|
| 625 |
41790
|
eri.katsar
|
}
|
| 626 |
27955
|
claudio.at
|
|
| 627 |
56508
|
antonis.le
|
private String clean(String value) {
|
| 628 |
41790
|
eri.katsar
|
if (value != null) {
|
| 629 |
36689
|
eri.katsar
|
|
| 630 |
42734
|
eri.katsar
|
value = value.replaceAll("[\"\\r\\\\;]", "");
|
| 631 |
|
|
value = value.replace(DELIM, " ");
|
| 632 |
|
|
value = value.replace(ENCLOSING, " ");
|
| 633 |
47371
|
tsampikos.
|
value = value.replaceAll("\\r\\n|\\r|\\n", " ");
|
| 634 |
36689
|
eri.katsar
|
|
| 635 |
42734
|
eri.katsar
|
return value;
|
| 636 |
|
|
} else {
|
| 637 |
|
|
return "";
|
| 638 |
41790
|
eri.katsar
|
}
|
| 639 |
27955
|
claudio.at
|
|
| 640 |
41790
|
eri.katsar
|
}
|
| 641 |
27955
|
claudio.at
|
|
| 642 |
56508
|
antonis.le
|
private String cleanId(String value) {
|
| 643 |
41790
|
eri.katsar
|
if (value != null) {
|
| 644 |
56505
|
antonis.le
|
// DO NOT CHANGE THIS: IT REMOVES ID PREFIX ( "5|datacite____::" to "datacite____::")
|
| 645 |
|
|
// AND REPLACES OCCURRENCES OF DELIM CHARS IN DATA
|
| 646 |
41790
|
eri.katsar
|
value = value.replaceFirst(".*\\|", "");
|
| 647 |
42734
|
eri.katsar
|
value = value.replace("\n", "");
|
| 648 |
|
|
value = value.replace(ENCLOSING, "");
|
| 649 |
|
|
value = value.replace(DELIM, "");
|
| 650 |
|
|
value = value.replace("\"", "");
|
| 651 |
|
|
value = value.replace("«", " ");
|
| 652 |
|
|
value = value.replace("»", " ");
|
| 653 |
41790
|
eri.katsar
|
}
|
| 654 |
29336
|
eri.katsar
|
|
| 655 |
42734
|
eri.katsar
|
return ENCLOSING + value + ENCLOSING;
|
| 656 |
41790
|
eri.katsar
|
}
|
| 657 |
31900
|
eri.katsar
|
|
| 658 |
56508
|
antonis.le
|
private String cleanUrl(String value) {
|
| 659 |
42734
|
eri.katsar
|
value = value.replace(DELIM, " ");
|
| 660 |
|
|
value = value.replace(ENCLOSING, " ");
|
| 661 |
|
|
value = value.replace(" ", "");
|
| 662 |
|
|
value = value.replace("\n", "");
|
| 663 |
57089
|
antonis.le
|
value = value.replace("\r", "");
|
| 664 |
|
|
value = value.replace("\\n", "");
|
| 665 |
|
|
value = value.replace("\\r", "");
|
| 666 |
42734
|
eri.katsar
|
return value;
|
| 667 |
|
|
}
|
| 668 |
|
|
|
| 669 |
56508
|
antonis.le
|
private long DATEDIFF(String startDate, String endDate) {
|
| 670 |
|
|
long MILLISECS_PER_DAY = 24 * 60 * 60 * 1000L;
|
| 671 |
|
|
long days;
|
| 672 |
41790
|
eri.katsar
|
SimpleDateFormat format = new SimpleDateFormat("yyyy-MM-dd"); // "dd/MM/yyyy HH:mm:ss");
|
| 673 |
|
|
// <startdate>2011-09-01</startdate>
|
| 674 |
|
|
// <enddate>2015-08-31</enddate>
|
| 675 |
56508
|
antonis.le
|
Date dateIni;
|
| 676 |
|
|
Date dateFin;
|
| 677 |
37693
|
eri.katsar
|
|
| 678 |
41790
|
eri.katsar
|
if (startDate == null || startDate.isEmpty() || endDate == null || endDate.isEmpty()) {
|
| 679 |
|
|
return 0;
|
| 680 |
|
|
}
|
| 681 |
|
|
try {
|
| 682 |
56508
|
antonis.le
|
dateIni = format.parse(startDate);
|
| 683 |
|
|
dateFin = format.parse(endDate);
|
| 684 |
41790
|
eri.katsar
|
days = (dateFin.getTime() - dateIni.getTime()) / MILLISECS_PER_DAY;
|
| 685 |
|
|
} catch (Exception e) {
|
| 686 |
42734
|
eri.katsar
|
|
| 687 |
41790
|
eri.katsar
|
return 0;
|
| 688 |
|
|
}
|
| 689 |
37693
|
eri.katsar
|
|
| 690 |
41790
|
eri.katsar
|
return days;
|
| 691 |
|
|
}
|
| 692 |
27955
|
claudio.at
|
}
|