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package eu.dnetlib.repo.manager.service;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.api.functionality.ValidatorServiceException;
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import eu.dnetlib.domain.data.Repository;
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import eu.dnetlib.domain.data.RepositoryInterface;
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import eu.dnetlib.domain.enabling.Vocabulary;
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import eu.dnetlib.domain.functionality.validator.JobForValidation;
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import eu.dnetlib.repo.manager.domain.*;
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import eu.dnetlib.repo.manager.exception.ResourceNotFoundException;
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import eu.dnetlib.repo.manager.utils.Converter;
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import gr.uoa.di.driver.enabling.vocabulary.VocabularyLoader;
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import org.apache.commons.codec.digest.DigestUtils;
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import org.apache.log4j.Logger;
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import org.json.JSONArray;
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import org.json.JSONException;
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import org.json.JSONObject;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Value;
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import org.springframework.core.ParameterizedTypeReference;
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import org.springframework.http.*;
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import org.springframework.http.converter.json.MappingJackson2HttpMessageConverter;
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import org.springframework.security.core.Authentication;
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import org.springframework.security.core.context.SecurityContextHolder;
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import org.springframework.stereotype.Service;
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import org.springframework.web.client.RestClientException;
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import org.springframework.web.client.RestTemplate;
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import org.springframework.web.util.UriComponents;
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import org.springframework.web.util.UriComponentsBuilder;
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import javax.annotation.PostConstruct;
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import java.io.IOException;
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import java.sql.Timestamp;
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import java.util.*;
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import java.util.concurrent.ConcurrentHashMap;
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import java.util.stream.Collectors;
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@Service("repositoryService")
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public class RepositoryServiceImpl implements RepositoryService {
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@Value("${api.baseAddress}")
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private String baseAddress;
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@Value("${services.repo-manager.adminEmail}")
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private String adminEmail;
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@Autowired
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RestTemplate restTemplate;
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private HttpHeaders httpHeaders;
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private final String[] vocabularyNames = {"dnet:countries", "dnet:datasource_typologies", "dnet:compatibilityLevel"};
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private static final Logger LOGGER = Logger.getLogger(RepositoryServiceImpl.class);
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@Value("${services.repomanager.usageStatisticsDiagramsBaseURL}")
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private String usageStatisticsDiagramsBaseURL;
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@Value("${services.repomanager.usageStatisticsNumbersBaseURL}")
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private String usageStatisticsNumbersBaseURL;
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@Autowired
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private VocabularyLoader vocabularyLoader;
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@Autowired
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private PiWikService piWikService;
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@Autowired
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private EmailUtils emailUtils;
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@Autowired
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ValidatorService validatorService;
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private Map<String, Vocabulary> vocabularyMap = new ConcurrentHashMap<>();
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private Map<String, String> countriesMap = new HashMap<>();
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private Map<String, String> inverseCountriesMap = new HashMap<>();
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private static Map<String,List<String>> dataSourceClass = new HashMap<>();
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private static Map<String,String> invertedDataSourceClass = new HashMap<>();
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@PostConstruct
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private void init() {
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LOGGER.debug("Initialization method of repository api!");
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LOGGER.debug("Updated version!");
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dataSourceClass.put("opendoar",Arrays.asList("pubsrepository::institutional","pubsrepository::thematic","pubsrepository::unknown","pubsrepository::mock"));
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dataSourceClass.put("re3data", Collections.singletonList("datarepository::unknown"));
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dataSourceClass.put("journal", Collections.singletonList("pubsrepository::journal"));
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dataSourceClass.put("aggregator",Arrays.asList("aggregator::pubsrepository::institutional","aggregator::pubsrepository::journals","aggregator::datarepository", "aggregator::pubsrepository::unknown"));
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invertedDataSourceClass.put("pubsrepository::institutional","opendoar");
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invertedDataSourceClass.put("pubsrepository::thematic","opendoar");
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invertedDataSourceClass.put("pubsrepository::unknown","opendoar");
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invertedDataSourceClass.put("pubsrepository::mock","opendoar");
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invertedDataSourceClass.put("datarepository::unknown","re3data");
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invertedDataSourceClass.put("pubsrepository::journal","journal");
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invertedDataSourceClass.put("aggregator::pubsrepository::institutional","aggregator");
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invertedDataSourceClass.put("aggregator::pubsrepository::journals","aggregator");
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invertedDataSourceClass.put("aggregator::datarepository","aggregator");
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invertedDataSourceClass.put("aggregator::pubsrepository::unknown","aggregator");
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httpHeaders = new HttpHeaders();
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httpHeaders.setContentType(MediaType.APPLICATION_JSON_UTF8);
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for (String vocName : vocabularyNames) {
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vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
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}
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Country[] countries = getCountries();
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for (Country c : countries) {
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countriesMap.put(c.getName(), c.getCode());
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inverseCountriesMap.put(c.getCode(), c.getName());
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}
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}
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@Override
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public Country[] getCountries() {
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/countries")
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.build().encode();
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return restTemplate.getForObject(uriComponents.toUri(), Country[].class);
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}
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@Override
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public List<RepositorySnippet> getRepositoriesByCountry(String country,
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String mode,
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Boolean managed) throws JSONException, IOException {
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LOGGER.debug("Getting repositories by country!");
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int page = 0;
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int size = 100;
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List<RepositorySnippet> resultSet = new ArrayList<>();
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ObjectMapper mapper = new ObjectMapper();
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String filterKey = "UNKNOWN";
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if (mode.equalsIgnoreCase("opendoar"))
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filterKey = "openaire____::opendoar";
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else if (mode.equalsIgnoreCase("re3data"))
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filterKey = "openaire____::re3data";
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LOGGER.debug("Country code equals : " + country);
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LOGGER.debug("Filter mode equals : " + filterKey);
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UriComponents uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setCountry(country);
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requestFilter.setCollectedfrom(filterKey);
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try{
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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while (jsonArray.length() > 0 ) {
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resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),
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mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
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page += 1;
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uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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}
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return resultSet;
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}catch (Exception e){
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| 172 |
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LOGGER.debug("Exception on getRepositoriesByCountry" , e);
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// emailUtils.reportException(e);
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throw e;
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}
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}
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public List<RepositorySnippet> searchRegisteredRepositories(String country, String typology, String englishName,
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String officialName, String requestSortBy, String order, int page, int pageSize) throws Exception {
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LOGGER.debug("Searching registered repositories");
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| 182 |
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| 183 |
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List<RepositorySnippet> resultSet = new ArrayList<>();
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| 184 |
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ObjectMapper mapper = new ObjectMapper();
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| 185 |
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| 186 |
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UriComponents uriComponents = searchRegisteredDatasource(requestSortBy, order, Integer.toString(page), Integer.toString(pageSize));
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| 187 |
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| 188 |
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RequestFilter requestFilter = new RequestFilter();
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| 189 |
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requestFilter.setCountry(country);
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| 190 |
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requestFilter.setTypology(typology);
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| 191 |
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requestFilter.setOfficialname(officialName);
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| 192 |
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requestFilter.setEnglishname(englishName);
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| 193 |
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| 194 |
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try {
|
| 195 |
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
|
| 196 |
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JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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| 197 |
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| 198 |
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resultSet.addAll(mapper.readValue(String.valueOf(jsonArray), mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
|
| 199 |
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|
| 200 |
|
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return resultSet;
|
| 201 |
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}catch (Exception e){
|
| 202 |
|
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LOGGER.error("Error searching registered datasources" , e);
|
| 203 |
|
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throw e;
|
| 204 |
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}
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| 205 |
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}
|
| 206 |
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|
| 207 |
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private Repository updateRepositoryInfo(Repository r) throws JSONException {
|
| 208 |
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|
| 209 |
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/*
|
| 210 |
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* from datasource class
|
| 211 |
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* we get the datasource type form the inverted map
|
| 212 |
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* */
|
| 213 |
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r.setDatasourceType(getRepositoryType(r.getDatasourceClass()));
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| 214 |
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r.setInterfaces(this.getRepositoryInterface(r.getId()));
|
| 215 |
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r.setPiwikInfo(piWikService.getPiwikSiteForRepo(r.getId()));
|
| 216 |
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r.setCountryName(getCountryName(r.getCountryCode()));
|
| 217 |
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return r;
|
| 218 |
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}
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| 219 |
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|
| 220 |
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|
| 221 |
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private Collection<Repository> getRepositoriesByMode(String mode, List<Repository> rs) {
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| 222 |
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|
| 223 |
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List<Repository> reps = new ArrayList<>();
|
| 224 |
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for (Repository r : rs) {
|
| 225 |
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if (r.getCollectedFrom() != null && r.getCollectedFrom().equals(mode))
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| 226 |
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reps.add(r);
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| 227 |
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| 228 |
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}
|
| 229 |
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return reps;
|
| 230 |
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}
|
| 231 |
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|
| 232 |
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@Override
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| 233 |
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public List<Repository> getRepositoriesOfUser(String userEmail,
|
| 234 |
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String page,
|
| 235 |
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String size) throws JSONException {
|
| 236 |
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|
| 237 |
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LOGGER.debug("Retreiving repositories of user : " + userEmail );
|
| 238 |
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UriComponents uriComponents = searchDatasource(page,size);
|
| 239 |
50614
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RequestFilter requestFilter = new RequestFilter();
|
| 240 |
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requestFilter.setRegisteredby(userEmail);
|
| 241 |
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|
| 242 |
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try{
|
| 243 |
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
|
| 244 |
49988
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|
| 245 |
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List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
|
| 246 |
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for (Repository r : repos)
|
| 247 |
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r.setPiwikInfo(piWikService.getPiwikSiteForRepo(r.getId()));
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| 248 |
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return repos;
|
| 249 |
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|
}catch (Exception e){
|
| 250 |
|
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LOGGER.debug("Exception on getRepositoriesOfUser" , e);
|
| 251 |
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emailUtils.reportException(e);
|
| 252 |
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throw e;
|
| 253 |
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}
|
| 254 |
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}
|
| 255 |
|
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|
| 256 |
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@Override
|
| 257 |
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public List<RepositorySnippet> getRepositoriesSnippetOfUser(String userEmail, String page, String size) throws IOException, JSONException {
|
| 258 |
|
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List<RepositorySnippet> resultSet = new ArrayList<>();
|
| 259 |
|
|
ObjectMapper mapper = new ObjectMapper();
|
| 260 |
|
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|
| 261 |
|
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UriComponents uriComponents = searchSnipperDatasource(page,size);
|
| 262 |
|
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RequestFilter requestFilter = new RequestFilter();
|
| 263 |
|
|
requestFilter.setRegisteredby(userEmail);
|
| 264 |
|
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|
| 265 |
|
|
try{
|
| 266 |
|
|
String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
|
| 267 |
|
|
JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
|
| 268 |
|
|
while (jsonArray.length() > 0 ) {
|
| 269 |
|
|
resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),
|
| 270 |
|
|
mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
|
| 271 |
|
|
page += 1;
|
| 272 |
|
|
uriComponents = searchSnipperDatasource(page,size);
|
| 273 |
|
|
rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
|
| 274 |
|
|
jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
|
| 275 |
|
|
}
|
| 276 |
|
|
resultSet.parallelStream().forEach(repositorySnippet -> {
|
| 277 |
|
|
repositorySnippet.setPiwikInfo(piWikService.getPiwikSiteForRepo(repositorySnippet.getId()));
|
| 278 |
|
|
});
|
| 279 |
|
|
return resultSet;
|
| 280 |
|
|
}catch (Exception e){
|
| 281 |
|
|
LOGGER.debug("Exception on getRepositoriesByCountry" , e);
|
| 282 |
|
|
throw e;
|
| 283 |
|
|
}
|
| 284 |
|
|
}
|
| 285 |
|
|
|
| 286 |
|
|
@Override
|
| 287 |
56761
|
ioannis.di
|
public Repository getRepositoryById(String id) throws JSONException,ResourceNotFoundException {
|
| 288 |
49397
|
panagiotis
|
|
| 289 |
50845
|
panagiotis
|
LOGGER.debug("Retreiving repositories with id : " + id );
|
| 290 |
50945
|
panagiotis
|
Repository repo = null;
|
| 291 |
50845
|
panagiotis
|
UriComponents uriComponents = searchDatasource("0","100");
|
| 292 |
|
|
RequestFilter requestFilter = new RequestFilter();
|
| 293 |
|
|
requestFilter.setId(id);
|
| 294 |
51831
|
panagiotis
|
|
| 295 |
|
|
try{
|
| 296 |
|
|
String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
|
| 297 |
|
|
JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
|
| 298 |
52781
|
panagiotis
|
|
| 299 |
|
|
if(jsonArray.length() == 0)
|
| 300 |
|
|
throw new ResourceNotFoundException();
|
| 301 |
|
|
|
| 302 |
|
|
repo = Converter.jsonToRepositoryObject(jsonArray.getJSONObject(0));
|
| 303 |
|
|
return updateRepositoryInfo(repo);
|
| 304 |
|
|
}catch (JSONException e){
|
| 305 |
51831
|
panagiotis
|
LOGGER.debug("Exception on getRepositoryById" , e);
|
| 306 |
|
|
emailUtils.reportException(e);
|
| 307 |
|
|
throw e;
|
| 308 |
|
|
}
|
| 309 |
|
|
|
| 310 |
49236
|
panagiotis
|
}
|
| 311 |
|
|
|
| 312 |
49988
|
panagiotis
|
|
| 313 |
49236
|
panagiotis
|
@Override
|
| 314 |
57176
|
ioannis.di
|
public List<AggregationDetails> getRepositoryAggregations(String id, int from, int size) throws JSONException {
|
| 315 |
49763
|
panagiotis
|
|
| 316 |
50845
|
panagiotis
|
LOGGER.debug("Retreiving aggregations for repository with id : " + id );
|
| 317 |
57176
|
ioannis.di
|
UriComponents uriComponents = searchDatasource(from+"",size+"");
|
| 318 |
50845
|
panagiotis
|
RequestFilter requestFilter = new RequestFilter();
|
| 319 |
|
|
requestFilter.setId(id);
|
| 320 |
49935
|
panagiotis
|
|
| 321 |
52781
|
panagiotis
|
List<AggregationDetails> aggregationHistory = new ArrayList<>();
|
| 322 |
|
|
|
| 323 |
49960
|
panagiotis
|
try {
|
| 324 |
57549
|
ioannis.di
|
long start = System.currentTimeMillis();
|
| 325 |
51831
|
panagiotis
|
String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
|
| 326 |
57549
|
ioannis.di
|
long end = System.currentTimeMillis();
|
| 327 |
|
|
|
| 328 |
|
|
System.out.println("Aggregations request through rest template took " + (end-start)+"ms");
|
| 329 |
51831
|
panagiotis
|
JSONObject repository = new JSONObject(rs);
|
| 330 |
54745
|
panagiotis
|
|
| 331 |
|
|
if(repository.getJSONArray("datasourceInfo").length() == 0)
|
| 332 |
|
|
return aggregationHistory;
|
| 333 |
57549
|
ioannis.di
|
|
| 334 |
|
|
start = System.currentTimeMillis();
|
| 335 |
52781
|
panagiotis
|
aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
|
| 336 |
57549
|
ioannis.di
|
end = System.currentTimeMillis();
|
| 337 |
|
|
|
| 338 |
|
|
System.out.println("Getting aggregations history from json " + (end-start)+"ms");
|
| 339 |
52781
|
panagiotis
|
return aggregationHistory.size() == 0? aggregationHistory : aggregationHistory.stream()
|
| 340 |
|
|
.sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
|
| 341 |
57155
|
ioannis.di
|
.limit(size)
|
| 342 |
52781
|
panagiotis
|
.collect(Collectors.toList());
|
| 343 |
|
|
} catch (JSONException e) {
|
| 344 |
|
|
LOGGER.debug("Exception on getRepositoryAggregations" , e);
|
| 345 |
|
|
emailUtils.reportException(e);
|
| 346 |
|
|
throw e;
|
| 347 |
|
|
}
|
| 348 |
51831
|
panagiotis
|
|
| 349 |
52781
|
panagiotis
|
}
|
| 350 |
|
|
|
| 351 |
|
|
@Override
|
| 352 |
56761
|
ioannis.di
|
public Map<String, List<AggregationDetails>> getRepositoryAggregationsByYear(String id) throws JSONException {
|
| 353 |
52781
|
panagiotis
|
LOGGER.debug("Retreiving aggregations (by year) for repository with id : " + id );
|
| 354 |
|
|
UriComponents uriComponents = searchDatasource("0","100");
|
| 355 |
|
|
RequestFilter requestFilter = new RequestFilter();
|
| 356 |
|
|
requestFilter.setId(id);
|
| 357 |
|
|
|
| 358 |
|
|
List<AggregationDetails> aggregationHistory = new ArrayList<>();
|
| 359 |
|
|
Map<String, List<AggregationDetails>> aggregationByYear = new HashMap<>();
|
| 360 |
|
|
try {
|
| 361 |
|
|
String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
|
| 362 |
|
|
JSONObject repository = new JSONObject(rs);
|
| 363 |
54745
|
panagiotis
|
|
| 364 |
|
|
if(repository.getJSONArray("datasourceInfo").length() == 0)
|
| 365 |
|
|
return aggregationByYear;
|
| 366 |
|
|
|
| 367 |
52781
|
panagiotis
|
aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
|
| 368 |
|
|
return aggregationHistory.size() == 0? aggregationByYear:createYearMap(aggregationHistory);
|
| 369 |
|
|
|
| 370 |
49960
|
panagiotis
|
} catch (JSONException e) {
|
| 371 |
51831
|
panagiotis
|
LOGGER.debug("Exception on getRepositoryAggregations" , e);
|
| 372 |
|
|
emailUtils.reportException(e);
|
| 373 |
49935
|
panagiotis
|
throw e;
|
| 374 |
|
|
}
|
| 375 |
52781
|
panagiotis
|
}
|
| 376 |
49935
|
panagiotis
|
|
| 377 |
52781
|
panagiotis
|
private Map<String,List<AggregationDetails>> createYearMap(List<AggregationDetails> aggregationHistory) {
|
| 378 |
|
|
Map<String, List<AggregationDetails>> aggregationByYear;
|
| 379 |
|
|
aggregationHistory = aggregationHistory.stream()
|
| 380 |
|
|
.sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
|
| 381 |
|
|
.collect(Collectors.toList());
|
| 382 |
|
|
|
| 383 |
|
|
return aggregationHistory.stream()
|
| 384 |
|
|
.collect(Collectors.groupingBy(AggregationDetails::getYear));
|
| 385 |
49763
|
panagiotis
|
}
|
| 386 |
|
|
|
| 387 |
52781
|
panagiotis
|
|
| 388 |
49763
|
panagiotis
|
@Override
|
| 389 |
56761
|
ioannis.di
|
public List<Repository> getRepositoriesByName(String name,
|
| 390 |
|
|
String page,
|
| 391 |
|
|
String size) throws JSONException {
|
| 392 |
49397
|
panagiotis
|
|
| 393 |
50845
|
panagiotis
|
LOGGER.debug("Retreiving repositories with official name : " + name );
|
| 394 |
|
|
UriComponents uriComponents = searchDatasource("0","100");
|
| 395 |
|
|
RequestFilter requestFilter = new RequestFilter();
|
| 396 |
|
|
requestFilter.setOfficialname(name);
|
| 397 |
|
|
|
| 398 |
51831
|
panagiotis
|
try{
|
| 399 |
|
|
String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
|
| 400 |
|
|
List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
|
| 401 |
|
|
for (Repository r : repos)
|
| 402 |
52781
|
panagiotis
|
updateRepositoryInfo(r);
|
| 403 |
51831
|
panagiotis
|
return repos;
|
| 404 |
|
|
}catch (Exception e){
|
| 405 |
|
|
LOGGER.debug("Exception on getRepositoriesByName" , e);
|
| 406 |
|
|
emailUtils.reportException(e);
|
| 407 |
|
|
throw e;
|
| 408 |
|
|
}
|
| 409 |
|
|
|
| 410 |
49236
|
panagiotis
|
}
|
| 411 |
|
|
|
| 412 |
|
|
@Override
|
| 413 |
56761
|
ioannis.di
|
public List<RepositoryInterface> getRepositoryInterface(String id) throws JSONException {
|
| 414 |
49397
|
panagiotis
|
|
| 415 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 416 |
49813
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/api/")
|
| 417 |
51330
|
panagiotis
|
.path("/{id}")
|
| 418 |
49397
|
panagiotis
|
.build().expand(id).encode();
|
| 419 |
|
|
|
| 420 |
51831
|
panagiotis
|
try{
|
| 421 |
|
|
String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
|
| 422 |
|
|
return Converter.jsonToRepositoryInterfaceList(new JSONObject(rs));
|
| 423 |
|
|
}catch (Exception e ){
|
| 424 |
|
|
LOGGER.debug("Exception on getRepositoryInterface" , e);
|
| 425 |
|
|
emailUtils.reportException(e);
|
| 426 |
|
|
throw e;
|
| 427 |
|
|
}
|
| 428 |
|
|
|
| 429 |
49236
|
panagiotis
|
}
|
| 430 |
|
|
|
| 431 |
|
|
@Override
|
| 432 |
56761
|
ioannis.di
|
public Repository addRepository(String datatype,
|
| 433 |
|
|
Repository repository) throws Exception {
|
| 434 |
49898
|
panagiotis
|
|
| 435 |
49960
|
panagiotis
|
LOGGER.debug("storing " + datatype + " repository with id: " + repository.getId());
|
| 436 |
54690
|
panagiotis
|
|
| 437 |
|
|
repository.setCountryCode(countriesMap.get(repository.getCountryName()));
|
| 438 |
|
|
repository.setActivationId(UUID.randomUUID().toString());
|
| 439 |
|
|
repository.setCollectedFrom("infrastruct_::openaire");
|
| 440 |
|
|
|
| 441 |
|
|
if (datatype.equals("journal")) {
|
| 442 |
|
|
repository.setId("openaire____::issn" + repository.getIssn());
|
| 443 |
|
|
repository.setNamespacePrefix("issn" + repository.getIssn());
|
| 444 |
|
|
this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
|
| 445 |
|
|
}else if (datatype.equals("aggregator")) {
|
| 446 |
|
|
repository.setId("openaire____::" + com.unboundid.util.Base64.encode(repository.getOfficialName()));
|
| 447 |
|
|
repository.setNamespacePrefix(DigestUtils.md5Hex(repository.getOfficialName()).substring(0,12));
|
| 448 |
|
|
this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
|
| 449 |
|
|
}else {
|
| 450 |
|
|
this.latentUpdate(repository, SecurityContextHolder.getContext().getAuthentication());
|
| 451 |
|
|
}
|
| 452 |
|
|
|
| 453 |
50945
|
panagiotis
|
return repository;
|
| 454 |
49963
|
panagiotis
|
}
|
| 455 |
49960
|
panagiotis
|
|
| 456 |
54690
|
panagiotis
|
/* update method acting as add -> send email with registration topic/body*/
|
| 457 |
|
|
private Repository latentUpdate(Repository repository, Authentication authentication) throws Exception {
|
| 458 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 459 |
|
|
.fromHttpUrl(baseAddress + "/ds/update/")
|
| 460 |
|
|
.build()
|
| 461 |
|
|
.encode();
|
| 462 |
|
|
|
| 463 |
|
|
try {
|
| 464 |
|
|
String json_repository = Converter.repositoryObjectToJson(repository);
|
| 465 |
|
|
LOGGER.debug("JSON to add(update) -> " + json_repository);
|
| 466 |
|
|
|
| 467 |
|
|
HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
|
| 468 |
|
|
ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
|
| 469 |
|
|
|
| 470 |
54924
|
panagiotis
|
if (responseEntity.getStatusCode().equals(HttpStatus.OK)) {
|
| 471 |
54690
|
panagiotis
|
emailUtils.sendUserRegistrationEmail(repository, authentication);
|
| 472 |
56636
|
antonis.le
|
emailUtils.sendAdminRegistrationEmail(repository, authentication);
|
| 473 |
|
|
} else
|
| 474 |
54690
|
panagiotis
|
LOGGER.debug(responseEntity.getBody().toString());
|
| 475 |
|
|
|
| 476 |
|
|
return repository;
|
| 477 |
|
|
} catch (Exception e) {
|
| 478 |
|
|
LOGGER.debug("Exception on updateRepository" , e);
|
| 479 |
|
|
emailUtils.reportException(e);
|
| 480 |
|
|
throw e;
|
| 481 |
|
|
}
|
| 482 |
|
|
|
| 483 |
|
|
|
| 484 |
|
|
}
|
| 485 |
|
|
|
| 486 |
51239
|
panagiotis
|
@Override
|
| 487 |
56761
|
ioannis.di
|
public Repository updateRepository(Repository repository,Authentication authentication) throws Exception {
|
| 488 |
51330
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
| 489 |
51239
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/update/")
|
| 490 |
|
|
.build()
|
| 491 |
51330
|
panagiotis
|
.encode();
|
| 492 |
51586
|
panagiotis
|
|
| 493 |
51831
|
panagiotis
|
try {
|
| 494 |
54078
|
panagiotis
|
String json_repository = Converter.repositoryObjectToJson(repository);
|
| 495 |
53933
|
panagiotis
|
|
| 496 |
|
|
LOGGER.debug("JSON to update -> " + json_repository);
|
| 497 |
|
|
|
| 498 |
|
|
HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
|
| 499 |
56636
|
antonis.le
|
ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity
|
| 500 |
|
|
, ResponseEntity.class);
|
| 501 |
53933
|
panagiotis
|
|
| 502 |
56636
|
antonis.le
|
if (responseEntity.getStatusCode().equals(HttpStatus.OK)) {
|
| 503 |
57912
|
stefania.m
|
emailUtils.sendUserUpdateRepositoryInfoEmail(repository, authentication);
|
| 504 |
|
|
emailUtils.sendAdminUpdateRepositoryInfoEmail(repository, authentication);
|
| 505 |
56636
|
antonis.le
|
} else
|
| 506 |
53933
|
panagiotis
|
LOGGER.debug(responseEntity.getBody().toString());
|
| 507 |
|
|
|
| 508 |
51831
|
panagiotis
|
return repository;
|
| 509 |
53933
|
panagiotis
|
} catch (Exception e) {
|
| 510 |
51831
|
panagiotis
|
LOGGER.debug("Exception on updateRepository" , e);
|
| 511 |
|
|
emailUtils.reportException(e);
|
| 512 |
|
|
throw e;
|
| 513 |
|
|
}
|
| 514 |
50075
|
panagiotis
|
}
|
| 515 |
|
|
|
| 516 |
53933
|
panagiotis
|
private void storeRepository(Repository repository, Authentication authentication) throws Exception {
|
| 517 |
49960
|
panagiotis
|
|
| 518 |
49963
|
panagiotis
|
Date utilDate = new Date();
|
| 519 |
|
|
Timestamp date = new Timestamp(utilDate.getTime());
|
| 520 |
|
|
repository.setDateOfCollection(date);
|
| 521 |
|
|
repository.setAggregator("OPENAIRE");
|
| 522 |
51525
|
panagiotis
|
repository.setCountryCode(countriesMap.get(repository.getCountryName()));
|
| 523 |
49963
|
panagiotis
|
|
| 524 |
49397
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
| 525 |
|
|
.fromHttpUrl(baseAddress + "/ds/add/")
|
| 526 |
|
|
.build()
|
| 527 |
|
|
.encode();
|
| 528 |
50051
|
panagiotis
|
String json_repository = Converter.repositoryObjectToJson(repository);
|
| 529 |
|
|
HttpEntity<String> httpEntity = new HttpEntity <String> (json_repository,httpHeaders);
|
| 530 |
54078
|
panagiotis
|
ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
|
| 531 |
53933
|
panagiotis
|
|
| 532 |
56636
|
antonis.le
|
if(responseEntity.getStatusCode().equals(HttpStatus.OK)) {
|
| 533 |
|
|
emailUtils.sendUserRegistrationEmail(repository, authentication);
|
| 534 |
|
|
emailUtils.sendAdminRegistrationEmail(repository, authentication);
|
| 535 |
|
|
} else {
|
| 536 |
53933
|
panagiotis
|
LOGGER.debug(responseEntity.getBody().toString());
|
| 537 |
|
|
}
|
| 538 |
49236
|
panagiotis
|
}
|
| 539 |
|
|
|
| 540 |
|
|
@Override
|
| 541 |
56761
|
ioannis.di
|
public void deleteRepositoryInterface(String id ,
|
| 542 |
|
|
String registeredBy){
|
| 543 |
49397
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
| 544 |
49813
|
panagiotis
|
.fromHttpUrl(baseAddress + "/ds/api/")
|
| 545 |
51525
|
panagiotis
|
.path("/{id}")
|
| 546 |
49813
|
panagiotis
|
.build().expand(id).encode();
|
| 547 |
51525
|
panagiotis
|
LOGGER.debug(uriComponents.toUri());
|
| 548 |
49813
|
panagiotis
|
restTemplate.delete(uriComponents.toUri());
|
| 549 |
|
|
}
|
| 550 |
|
|
|
| 551 |
|
|
@Override
|
| 552 |
56761
|
ioannis.di
|
public RepositoryInterface addRepositoryInterface(String datatype,
|
| 553 |
|
|
String repoId,
|
| 554 |
|
|
String registeredBy,
|
| 555 |
57912
|
stefania.m
|
RepositoryInterface repositoryInterface) throws Exception {
|
| 556 |
49963
|
panagiotis
|
try {
|
| 557 |
51525
|
panagiotis
|
Repository e = this.getRepositoryById(repoId);
|
| 558 |
|
|
repositoryInterface = createRepositoryInterface(e,repositoryInterface,datatype);
|
| 559 |
|
|
String json_interface = Converter.repositoryInterfaceObjectToJson(e,repositoryInterface);
|
| 560 |
49963
|
panagiotis
|
|
| 561 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 562 |
|
|
.fromHttpUrl(baseAddress + "/ds/api/add/")
|
| 563 |
|
|
.build()
|
| 564 |
|
|
.encode();
|
| 565 |
|
|
|
| 566 |
56761
|
ioannis.di
|
HttpEntity<String> httpEntity = new HttpEntity <> (json_interface,httpHeaders);
|
| 567 |
|
|
|
| 568 |
50051
|
panagiotis
|
|
| 569 |
57912
|
stefania.m
|
ResponseEntity responseEntity = restTemplate.postForObject(uriComponents.toUri(),httpEntity,ResponseEntity.class);
|
| 570 |
|
|
|
| 571 |
|
|
if(responseEntity.getStatusCode().equals(HttpStatus.OK)) {
|
| 572 |
|
|
emailUtils.sendAdminRegisterInterfaceEmail(e, repositoryInterface, SecurityContextHolder.getContext().getAuthentication());
|
| 573 |
|
|
emailUtils.sendUserRegisterInterfaceEmail(e, repositoryInterface, SecurityContextHolder.getContext().getAuthentication());
|
| 574 |
|
|
|
| 575 |
|
|
submitInterfaceValidation(e, registeredBy, repositoryInterface, false);
|
| 576 |
|
|
return repositoryInterface;
|
| 577 |
|
|
} else {
|
| 578 |
|
|
LOGGER.debug(responseEntity.getBody().toString());
|
| 579 |
|
|
throw new Exception("Registering" + baseAddress + " returned " + responseEntity.getStatusCode());
|
| 580 |
|
|
}
|
| 581 |
|
|
|
| 582 |
56761
|
ioannis.di
|
} catch (JSONException | ValidatorServiceException e) {
|
| 583 |
51831
|
panagiotis
|
LOGGER.debug("Exception on addRepositoryInterface" , e);
|
| 584 |
|
|
emailUtils.reportException(e);
|
| 585 |
|
|
throw e;
|
| 586 |
49963
|
panagiotis
|
}
|
| 587 |
|
|
}
|
| 588 |
|
|
|
| 589 |
56636
|
antonis.le
|
@Override
|
| 590 |
56761
|
ioannis.di
|
public RepositoryInterface updateRepositoryInterface(String repoId,
|
| 591 |
|
|
String registeredBy,
|
| 592 |
|
|
RepositoryInterface repositoryInterface) throws Exception {
|
| 593 |
56636
|
antonis.le
|
|
| 594 |
|
|
this.updateBaseUrl(repoId,repositoryInterface.getId(),repositoryInterface.getBaseUrl());
|
| 595 |
|
|
this.updateCompliance(repoId,repositoryInterface.getId(),repositoryInterface.getCompliance());
|
| 596 |
|
|
this.updateValidationSet(repoId,repositoryInterface.getId(),repositoryInterface.getAccessSet());
|
| 597 |
57912
|
stefania.m
|
|
| 598 |
|
|
Repository e = this.getRepositoryById(repoId);
|
| 599 |
|
|
emailUtils.sendAdminUpdateInterfaceEmail(e, repositoryInterface, SecurityContextHolder.getContext().getAuthentication());
|
| 600 |
|
|
emailUtils.sendUserUpdateInterfaceEmail(e, repositoryInterface, SecurityContextHolder.getContext().getAuthentication());
|
| 601 |
56961
|
ioannis.di
|
submitInterfaceValidation(getRepositoryById(repoId),registeredBy,repositoryInterface,true);
|
| 602 |
57912
|
stefania.m
|
|
| 603 |
56636
|
antonis.le
|
return repositoryInterface;
|
| 604 |
|
|
}
|
| 605 |
|
|
|
| 606 |
56961
|
ioannis.di
|
private void submitInterfaceValidation(Repository repo, String userEmail, RepositoryInterface iFace, boolean updateExisting) throws ValidatorServiceException {
|
| 607 |
56636
|
antonis.le
|
JobForValidation job = new JobForValidation();
|
| 608 |
|
|
|
| 609 |
|
|
job.setActivationId(UUID.randomUUID().toString());
|
| 610 |
|
|
job.setAdminEmails(Collections.singletonList(this.adminEmail));
|
| 611 |
|
|
job.setBaseUrl(iFace.getBaseUrl());
|
| 612 |
|
|
job.setDatasourceId(repo.getId());
|
| 613 |
|
|
job.setDesiredCompatibilityLevel(iFace.getDesiredCompatibilityLevel());
|
| 614 |
|
|
job.setInterfaceId(iFace.getId());
|
| 615 |
|
|
job.setOfficialName(repo.getOfficialName());
|
| 616 |
56761
|
ioannis.di
|
job.setRepoType(repo.getDatasourceType());
|
| 617 |
56636
|
antonis.le
|
job.setUserEmail(userEmail);
|
| 618 |
56761
|
ioannis.di
|
job.setValidationSet((iFace.getAccessSet().isEmpty() ? "none" : iFace.getAccessSet()));
|
| 619 |
56636
|
antonis.le
|
job.setRecords(-1);
|
| 620 |
56961
|
ioannis.di
|
job.setRegistration(!updateExisting);
|
| 621 |
|
|
job.setUpdateExisting(updateExisting);
|
| 622 |
56636
|
antonis.le
|
|
| 623 |
|
|
this.validatorService.submitJobForValidation(job);
|
| 624 |
|
|
}
|
| 625 |
|
|
|
| 626 |
51525
|
panagiotis
|
private RepositoryInterface createRepositoryInterface(Repository repo, RepositoryInterface iFace, String datatype) {
|
| 627 |
|
|
|
| 628 |
|
|
iFace.setContentDescription("metadata");
|
| 629 |
|
|
iFace.setCompliance("UNKNOWN");
|
| 630 |
|
|
|
| 631 |
|
|
if (datatype.equals("re3data"))
|
| 632 |
|
|
iFace.setAccessFormat("oai_datacite");
|
| 633 |
|
|
else
|
| 634 |
|
|
iFace.setAccessFormat("oai_dc");
|
| 635 |
|
|
|
| 636 |
|
|
|
| 637 |
|
|
if (repo.getDatasourceClass() != null && !repo.getDatasourceClass().isEmpty())
|
| 638 |
|
|
iFace.setTypology(repo.getDatasourceClass());
|
| 639 |
|
|
else if (datatype.equalsIgnoreCase("journal"))
|
| 640 |
|
|
iFace.setTypology("pubsrepository::journal");
|
| 641 |
|
|
else if (datatype.equalsIgnoreCase("aggregator"))
|
| 642 |
|
|
iFace.setTypology("aggregator::pubsrepository::unknown");
|
| 643 |
|
|
else if (datatype.equalsIgnoreCase("opendoar"))
|
| 644 |
|
|
iFace.setTypology("pubsrepository::unknown");
|
| 645 |
|
|
else if (datatype.equalsIgnoreCase("re3data"))
|
| 646 |
|
|
iFace.setTypology("datarepository::unknown");
|
| 647 |
|
|
|
| 648 |
|
|
iFace.setRemovable(true);
|
| 649 |
|
|
iFace.setAccessProtocol("oai");
|
| 650 |
|
|
iFace.setMetadataIdentifierPath("//*[local-name()='header']/*[local-name()='identifier']");
|
| 651 |
|
|
iFace.setId("api_________::" + repo.getId() + "::" + UUID.randomUUID().toString().substring(0, 8));
|
| 652 |
56761
|
ioannis.di
|
if (iFace.getAccessSet() == null || iFace.getAccessSet().isEmpty()) {
|
| 653 |
51525
|
panagiotis
|
LOGGER.debug("set is empty: " + iFace.getAccessSet());
|
| 654 |
|
|
iFace.removeAccessSet();
|
| 655 |
56761
|
ioannis.di
|
iFace.setAccessSet("none");
|
| 656 |
51525
|
panagiotis
|
}
|
| 657 |
|
|
return iFace;
|
| 658 |
|
|
}
|
| 659 |
|
|
|
| 660 |
49236
|
panagiotis
|
@Override
|
| 661 |
|
|
public List<String> getDnetCountries() {
|
| 662 |
49770
|
panagiotis
|
LOGGER.debug("Getting dnet-countries!");
|
| 663 |
49236
|
panagiotis
|
return Converter.readFile("countries.txt");
|
| 664 |
|
|
}
|
| 665 |
|
|
|
| 666 |
|
|
@Override
|
| 667 |
|
|
public List<String> getTypologies() {
|
| 668 |
|
|
return Converter.readFile("typologies.txt");
|
| 669 |
|
|
}
|
| 670 |
|
|
|
| 671 |
|
|
@Override
|
| 672 |
49763
|
panagiotis
|
public List<Timezone> getTimezones() {
|
| 673 |
|
|
List<String> timezones = Converter.readFile("timezones.txt");
|
| 674 |
|
|
return Converter.toTimezones(timezones);
|
| 675 |
49236
|
panagiotis
|
}
|
| 676 |
|
|
|
| 677 |
|
|
@Override
|
| 678 |
56761
|
ioannis.di
|
public List<String> getUrlsOfUserRepos(String userEmail,
|
| 679 |
|
|
String page,
|
| 680 |
|
|
String size){
|
| 681 |
49763
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
| 682 |
|
|
.fromHttpUrl(baseAddress + "/api/baseurl/")
|
| 683 |
|
|
.path("/{page}/{size}")
|
| 684 |
|
|
.build().expand(page,size).encode();
|
| 685 |
50614
|
panagiotis
|
|
| 686 |
51831
|
panagiotis
|
try{
|
| 687 |
|
|
RequestFilter requestFilter = new RequestFilter();
|
| 688 |
|
|
requestFilter.setRegisteredby(userEmail);
|
| 689 |
|
|
return Arrays.asList(restTemplate.postForObject(uriComponents.toUri(),requestFilter, String[].class));
|
| 690 |
|
|
}catch (Exception e){
|
| 691 |
|
|
LOGGER.debug("Exception on addRepositoryInterface" , e);
|
| 692 |
|
|
emailUtils.reportException(e);
|
| 693 |
|
|
throw e;
|
| 694 |
|
|
}
|
| 695 |
49236
|
panagiotis
|
}
|
| 696 |
|
|
|
| 697 |
49450
|
panagiotis
|
@Override
|
| 698 |
56761
|
ioannis.di
|
public List<String> getDatasourceVocabularies(String mode) {
|
| 699 |
49450
|
panagiotis
|
|
| 700 |
|
|
List<String> resultSet = new ArrayList<>();
|
| 701 |
|
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
| 702 |
|
|
if (mode.equalsIgnoreCase("aggregator")) {
|
| 703 |
|
|
if (entry.getKey().contains("aggregator"))
|
| 704 |
|
|
resultSet.add(entry.getValue());
|
| 705 |
|
|
} else if (mode.equalsIgnoreCase("journal")) {
|
| 706 |
|
|
if (entry.getKey().contains("journal"))
|
| 707 |
|
|
resultSet.add(entry.getValue());
|
| 708 |
|
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
| 709 |
|
|
if (entry.getKey().contains("pubsrepository"))
|
| 710 |
|
|
resultSet.add(entry.getValue());
|
| 711 |
|
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
| 712 |
|
|
if (entry.getKey().contains("datarepository"))
|
| 713 |
|
|
resultSet.add(entry.getValue());
|
| 714 |
|
|
}
|
| 715 |
|
|
}
|
| 716 |
|
|
|
| 717 |
|
|
|
| 718 |
|
|
return resultSet;
|
| 719 |
|
|
}
|
| 720 |
|
|
|
| 721 |
|
|
private Vocabulary getVocabulary(String vocName) {
|
| 722 |
|
|
|
| 723 |
|
|
if (!vocabularyMap.containsKey(vocName)) {
|
| 724 |
|
|
vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
|
| 725 |
|
|
}
|
| 726 |
|
|
return vocabularyMap.get(vocName);
|
| 727 |
|
|
}
|
| 728 |
|
|
|
| 729 |
49790
|
panagiotis
|
|
| 730 |
|
|
@Override
|
| 731 |
56761
|
ioannis.di
|
public Map<String, String> getCompatibilityClasses(String mode) {
|
| 732 |
49790
|
panagiotis
|
|
| 733 |
|
|
LOGGER.debug("Getting compatibility classes for mode: " + mode);
|
| 734 |
|
|
Map<String, String> retMap = new HashMap<String, String>();
|
| 735 |
|
|
|
| 736 |
|
|
Map<String, String> compatibilityClasses = this.getVocabulary("dnet:compatibilityLevel").getAsMap();
|
| 737 |
|
|
boolean foundData = false;
|
| 738 |
|
|
for (Map.Entry<String, String> entry : compatibilityClasses.entrySet()) {
|
| 739 |
|
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_ALL))
|
| 740 |
|
|
return compatibilityClasses;
|
| 741 |
|
|
else if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA)) {
|
| 742 |
|
|
if (entry.getKey().matches("^openaire[1-9].0_data$")) {
|
| 743 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 744 |
|
|
foundData = true;
|
| 745 |
|
|
}
|
| 746 |
|
|
} else {
|
| 747 |
|
|
if (entry.getKey().matches("^openaire[1-9].0$") || entry.getKey().equals("driver"))
|
| 748 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 749 |
|
|
}
|
| 750 |
|
|
}
|
| 751 |
|
|
|
| 752 |
|
|
//TODO TO BE REMOVED WHEN VOCABULARIES ARE UPDATED
|
| 753 |
|
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA) && !foundData)
|
| 754 |
|
|
retMap.put("openaire2.0_data", "OpenAIRE Data (funded, referenced datasets)");
|
| 755 |
|
|
|
| 756 |
|
|
return retMap;
|
| 757 |
|
|
}
|
| 758 |
|
|
|
| 759 |
|
|
@Override
|
| 760 |
56761
|
ioannis.di
|
public Map<String, String> getDatasourceClasses(String mode) {
|
| 761 |
49790
|
panagiotis
|
|
| 762 |
|
|
LOGGER.debug("Getting datasource classes for mode: " + mode);
|
| 763 |
|
|
|
| 764 |
|
|
Map<String, String> retMap = new HashMap<String, String>();
|
| 765 |
|
|
|
| 766 |
|
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
| 767 |
|
|
if (mode.equalsIgnoreCase("aggregator")) {
|
| 768 |
|
|
if (entry.getKey().contains("aggregator"))
|
| 769 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 770 |
|
|
} else if (mode.equalsIgnoreCase("journal")) {
|
| 771 |
|
|
if (entry.getKey().contains("journal"))
|
| 772 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 773 |
|
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
| 774 |
|
|
if (entry.getKey().contains("pubsrepository"))
|
| 775 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 776 |
|
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
| 777 |
|
|
if (entry.getKey().contains("datarepository"))
|
| 778 |
|
|
retMap.put(entry.getKey(), entry.getValue());
|
| 779 |
|
|
}
|
| 780 |
|
|
}
|
| 781 |
51549
|
panagiotis
|
return filterResults(retMap,mode);
|
| 782 |
49790
|
panagiotis
|
|
| 783 |
|
|
}
|
| 784 |
|
|
|
| 785 |
51549
|
panagiotis
|
private Map<String,String> filterResults(Map<String, String> map,String mode) {
|
| 786 |
|
|
|
| 787 |
|
|
HashMap<String,String> filteredMap = new HashMap<>();
|
| 788 |
|
|
for(String key:map.keySet())
|
| 789 |
|
|
if(dataSourceClass.get(mode).contains(key))
|
| 790 |
|
|
filteredMap.put(key,map.get(key));
|
| 791 |
|
|
|
| 792 |
|
|
return filteredMap;
|
| 793 |
|
|
}
|
| 794 |
|
|
|
| 795 |
49898
|
panagiotis
|
@Override
|
| 796 |
|
|
public String getCountryName(String countryCode) {
|
| 797 |
|
|
return inverseCountriesMap.get(countryCode);
|
| 798 |
|
|
}
|
| 799 |
|
|
|
| 800 |
50570
|
panagiotis
|
@Override
|
| 801 |
56761
|
ioannis.di
|
public MetricsInfo getMetricsInfoForRepository(String repoId) throws RepositoryServiceException {
|
| 802 |
50570
|
panagiotis
|
try {
|
| 803 |
|
|
|
| 804 |
|
|
MetricsInfo metricsInfo = new MetricsInfo();
|
| 805 |
|
|
metricsInfo.setDiagramsBaseURL(this.usageStatisticsDiagramsBaseURL);
|
| 806 |
|
|
metricsInfo.setMetricsNumbers(getMetricsNumbers(getOpenAIREId(repoId)));
|
| 807 |
|
|
return metricsInfo;
|
| 808 |
|
|
|
| 809 |
|
|
} catch (Exception e) {
|
| 810 |
|
|
LOGGER.error("Error while getting metrics info for repository: ", e);
|
| 811 |
51831
|
panagiotis
|
emailUtils.reportException(e);
|
| 812 |
50570
|
panagiotis
|
throw new RepositoryServiceException("General error", RepositoryServiceException.ErrorCode.GENERAL_ERROR);
|
| 813 |
|
|
}
|
| 814 |
|
|
}
|
| 815 |
|
|
|
| 816 |
51330
|
panagiotis
|
@Override
|
| 817 |
56761
|
ioannis.di
|
public Map<String, String> getListLatestUpdate(String mode) throws JSONException {
|
| 818 |
51330
|
panagiotis
|
if(mode.equals("opendoar"))
|
| 819 |
|
|
return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(0).getLastCollectionDate());
|
| 820 |
|
|
else
|
| 821 |
|
|
/*
|
| 822 |
|
|
* first api of re3data has null value on collection date
|
| 823 |
|
|
* */
|
| 824 |
|
|
return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(1).getLastCollectionDate());
|
| 825 |
|
|
}
|
| 826 |
|
|
|
| 827 |
54702
|
panagiotis
|
private void updateValidationSet(String repositoryId, String repositoryInterfaceId, String validationSet) throws Exception {
|
| 828 |
51549
|
panagiotis
|
UriComponents uriComponents = UriComponentsBuilder
|
| 829 |
|
|
.fromHttpUrl(baseAddress + "/ds/api/oaiset")
|
| 830 |
|
|
.queryParam("dsId",repositoryId)
|
| 831 |
|
|
.queryParam("apiId",repositoryInterfaceId)
|
| 832 |
|
|
.queryParam("oaiSet",validationSet)
|
| 833 |
|
|
.build().encode();
|
| 834 |
54702
|
panagiotis
|
restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, null, ResponseEntity.class);
|
| 835 |
|
|
|
| 836 |
51549
|
panagiotis
|
}
|
| 837 |
51525
|
panagiotis
|
|
| 838 |
51549
|
panagiotis
|
|
| 839 |
51525
|
panagiotis
|
private void updateBaseUrl(String repositoryId, String repositoryInterfaceId, String baseUrl) {
|
| 840 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 841 |
|
|
.fromHttpUrl(baseAddress + "/ds/api/baseurl")
|
| 842 |
|
|
.queryParam("dsId",repositoryId)
|
| 843 |
|
|
.queryParam("apiId",repositoryInterfaceId)
|
| 844 |
|
|
.queryParam("baseUrl",baseUrl)
|
| 845 |
|
|
.build().encode();
|
| 846 |
|
|
restTemplate.postForObject(uriComponents.toUri(),null,String.class);
|
| 847 |
|
|
}
|
| 848 |
|
|
|
| 849 |
|
|
private void updateCompliance(String repositoryId, String repositoryInterfaceId,String compliance) {
|
| 850 |
|
|
UriComponents uriComponents = UriComponentsBuilder
|
| 851 |
|
|
.fromHttpUrl(baseAddress + "/ds/api/compliance")
|
| 852 |
|
|
.queryParam("dsId",repositoryId)
|
| 853 |
|
|
.queryParam("apiId",repositoryInterfaceId)
|
| 854 |
|
|
.queryParam("compliance",compliance)
|
| 855 |
|
|
.build().encode();
|
| 856 |
|
|
restTemplate.postForObject(uriComponents.toUri(),null,String.class);
|
| 857 |
|
|
}
|
| 858 |
|
|
|
| 859 |
50570
|
panagiotis
|
private MetricsNumbers getMetricsNumbers(String openAIREID) throws BrokerException {
|
| 860 |
|
|
|
| 861 |
|
|
//build the uri params
|
| 862 |
|
|
UriComponentsBuilder builder = UriComponentsBuilder.fromHttpUrl(this.usageStatisticsNumbersBaseURL + openAIREID + "/clicks");
|
| 863 |
|
|
|
| 864 |
|
|
//create new template engine
|
| 865 |
|
|
RestTemplate template = new RestTemplate();
|
| 866 |
|
|
template.getMessageConverters().add(new MappingJackson2HttpMessageConverter());
|
| 867 |
|
|
ResponseEntity<MetricsNumbers> resp;
|
| 868 |
|
|
try {
|
| 869 |
|
|
//communicate with endpoint
|
| 870 |
|
|
resp = template.exchange(
|
| 871 |
|
|
builder.build().encode().toUri(),
|
| 872 |
|
|
HttpMethod.GET,
|
| 873 |
|
|
null,
|
| 874 |
|
|
new ParameterizedTypeReference<MetricsNumbers>() {
|
| 875 |
|
|
});
|
| 876 |
|
|
} catch (RestClientException e) {
|
| 877 |
51831
|
panagiotis
|
LOGGER.debug("Exception on getMetricsNumbers" , e);
|
| 878 |
|
|
emailUtils.reportException(e);
|
| 879 |
50570
|
panagiotis
|
throw e;
|
| 880 |
|
|
}
|
| 881 |
|
|
|
| 882 |
|
|
return resp.getBody();
|
| 883 |
|
|
}
|
| 884 |
|
|
|
| 885 |
|
|
private String getOpenAIREId(String repoId) {
|
| 886 |
|
|
|
| 887 |
|
|
if (repoId != null && repoId.contains("::")) {
|
| 888 |
|
|
return repoId.split("::")[0] + "::" + DigestUtils.md5Hex(repoId.split("::")[1]);
|
| 889 |
|
|
}
|
| 890 |
|
|
|
| 891 |
|
|
return null;
|
| 892 |
|
|
}
|
| 893 |
|
|
|
| 894 |
50631
|
panagiotis
|
private UriComponents searchDatasource(String page,String size){
|
| 895 |
50570
|
panagiotis
|
|
| 896 |
50631
|
panagiotis
|
return UriComponentsBuilder
|
| 897 |
|
|
.fromHttpUrl(baseAddress + "/ds/search/")
|
| 898 |
|
|
.path("/{page}/{size}/")
|
| 899 |
53113
|
panagiotis
|
.queryParam("requestSortBy","officialname")
|
| 900 |
50631
|
panagiotis
|
.queryParam("order","ASCENDING")
|
| 901 |
|
|
.build().expand(page, size).encode();
|
| 902 |
|
|
}
|
| 903 |
|
|
|
| 904 |
53113
|
panagiotis
|
private UriComponents searchSnipperDatasource(String page,String size){
|
| 905 |
|
|
|
| 906 |
|
|
return UriComponentsBuilder
|
| 907 |
|
|
.fromHttpUrl(baseAddress + "/ds/searchsnippet/")
|
| 908 |
|
|
.path("/{page}/{size}/")
|
| 909 |
|
|
.queryParam("requestSortBy","officialname")
|
| 910 |
|
|
.queryParam("order","ASCENDING")
|
| 911 |
|
|
.build().expand(page, size).encode();
|
| 912 |
|
|
}
|
| 913 |
|
|
|
| 914 |
56636
|
antonis.le
|
private UriComponents searchRegisteredDatasource(String requestSortBy, String order, String page,String size){
|
| 915 |
|
|
|
| 916 |
|
|
return UriComponentsBuilder
|
| 917 |
|
|
.fromHttpUrl(baseAddress + "/ds/searchregistered/")
|
| 918 |
|
|
.path("/{page}/{size}/")
|
| 919 |
|
|
.queryParam("requestSortBy",requestSortBy)
|
| 920 |
|
|
.queryParam("order",order)
|
| 921 |
|
|
.build().expand(page, size).encode();
|
| 922 |
|
|
}
|
| 923 |
|
|
|
| 924 |
51549
|
panagiotis
|
private String getRepositoryType(String typology){
|
| 925 |
|
|
return invertedDataSourceClass.get(typology);
|
| 926 |
|
|
}
|
| 927 |
50631
|
panagiotis
|
|
| 928 |
51549
|
panagiotis
|
|
| 929 |
49236
|
panagiotis
|
}
|