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53756
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alessia.ba
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<dri:objIdentifier>__bioTools__::001a7c03357f7060315bfe53ab8d2b05</dri:objIdentifier>
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<dri:recordIdentifier>Scoary</dri:recordIdentifier>
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<dr:CobjCategory type="software">0029</dr:CobjCategory>
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<oaf:concept id="elixir-gr"/>
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<datacite:resourceType resourceTypeGeneral="Software">Command-line tool</datacite:resourceType>
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<datacite:format>Python</datacite:format>
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<oaf:accessrights>OPEN SOURCE</oaf:accessrights>
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<oaf:accessrights>UNKNOWN</oaf:accessrights>
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<oaf:license>GPL-3.0</oaf:license>
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<oaf:collectedFrom id="rest________::bioTools" name="bio.tools"/>
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<datacite:publisher>bio.tools</datacite:publisher>
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<datacite:alternateIdentifier alternateIdentifierType="LandingPage">https://bio.tools/Scoary</datacite:alternateIdentifier>
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<datacite:relatedIdentifier relatedIdentifierType="URL" relationType="IsDocumentedBy">https://github.com/AdmiralenOla/Scoary/blob/master/LICENSE</datacite:relatedIdentifier>
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<datacite:alternateIdentifier alternateIdentifierType="DistributionLocation">https://github.com/AdmiralenOla/Scoary</datacite:alternateIdentifier>
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<datacite:alternateIdentifier alternateIdentifierType="local accession id">Scoary</datacite:alternateIdentifier>
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<oaf:identifier>Scoary</oaf:identifier>
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<datacite:title>Scoary</datacite:title>
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<datacite:version>1.6.11</datacite:version>
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<datacite:creator>
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<datacite:creatorName>Brynildsrud, Ola</datacite:creatorName>
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<datacite:givenName>Ola</datacite:givenName>
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<datacite:familyName>Brynildsrud</datacite:familyName>
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</datacite:creator>
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<contributors>
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<contributor contributorType="ContactPerson">
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<contributorName>Starr, Joan</contributorName>
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<givenName>Joan</givenName>
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<familyName>Starr</familyName>
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<nameIdentifier schemeURI="http://orcid.org/" nameIdentifierScheme="ORCID">0000-0002-7285-027X</nameIdentifier>
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<affiliation>California Digital Library</affiliation>
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</contributor>
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</contributors>
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<datacite:relatedIdentifier relatedIdentifierType="DOI" relationType="isCitedBy">10.1186/s13059-016-1108-8</datacite:relatedIdentifier>
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<datacite:description descriptionType="Abstract">Pan-genome wide association studies and is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the assocations between all genes in the accessory genome (all genes that are present in i genomes where 1 < i < N) and the traits. It reports a list of genes sorted by strength of association per trait.</datacite:description>
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<description descriptionType="Abstract">
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Computation of Fast Fourier Transform
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</description>
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<datacite:description descriptionType="TechnicalInfo">Linux</datacite:description>
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<datacite:description descriptionType="TechnicalInfo">Scoary correlates the genes of an accessory genome to an observed phenotype (e.g. resistance towards a certain antibiotic compound, a particular pathotype etc.). It is thus a quick way of establishing possible genetic mechanisms of an expressed trait, not unlike a GWAS, but with the entire pan-genome rather than a core set of mutations. Scoary works on both bacteria, Archea and (in theory at least) viruses.</datacite:description>
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<datacite:subject schemeURI="http://edamontology.org" subjectScheme="EDAM Ontology">topic_0625 Genotype and phenotype</datacite:subject>
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<oaf:dateAccepted>2016-09-12</oaf:dateAccepted>
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</datacite:resource>
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<originDescription altered="true" harvestDate="2018-09-27T08:50:11.429Z">
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<baseURL>https://bio.tools/api/tool</baseURL>
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