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package eu.dnetlib.functionality.modular.ui.dedup;
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import java.io.IOException;
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import java.util.Collections;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import java.util.Map.Entry;
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import java.util.Set;
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import java.util.UUID;
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import javax.annotation.Resource;
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import org.apache.commons.codec.binary.Base64;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.lang.exception.ExceptionUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.apache.solr.client.solrj.impl.CloudSolrServer;
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import org.apache.solr.common.SolrInputDocument;
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import org.dom4j.DocumentException;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Value;
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import org.springframework.stereotype.Controller;
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import org.springframework.web.bind.annotation.RequestBody;
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import org.springframework.web.bind.annotation.RequestMapping;
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import org.springframework.web.bind.annotation.RequestParam;
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import org.springframework.web.bind.annotation.ResponseBody;
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import com.google.common.base.Function;
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import com.google.common.base.Joiner;
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import com.google.common.base.Predicate;
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import com.google.common.base.Splitter;
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import com.google.common.collect.Iterables;
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import com.google.common.collect.Lists;
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import com.google.common.collect.Maps;
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import com.google.common.collect.Sets;
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import eu.dnetlib.data.mapreduce.util.OafDecoder;
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import eu.dnetlib.data.mapreduce.util.OafEntityDecoder;
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import eu.dnetlib.data.proto.OafProtos.Oaf;
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import eu.dnetlib.data.proto.OafProtos.Oaf.Builder;
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import eu.dnetlib.data.proto.OafProtos.OafEntity;
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import eu.dnetlib.data.transform.OafEntityMerger;
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import eu.dnetlib.data.transform.SolrProtoMapper;
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import eu.dnetlib.enabling.database.rmi.DatabaseService;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpDocumentNotFoundException;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
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import eu.dnetlib.enabling.locators.UniqueServiceLocator;
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import eu.dnetlib.enabling.resultset.client.ResultSetClientFactory;
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import eu.dnetlib.functionality.index.client.IndexClient;
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import eu.dnetlib.functionality.index.client.IndexClientException;
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import eu.dnetlib.functionality.index.client.ResolvingIndexClientFactory;
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import eu.dnetlib.functionality.index.client.response.LookupResponse;
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import eu.dnetlib.functionality.index.solr.feed.InputDocumentFactory;
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import eu.dnetlib.functionality.modular.ui.AbstractAjaxController;
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import eu.dnetlib.miscutils.datetime.DateUtils;
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import eu.dnetlib.pace.config.DedupConfig;
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@Controller
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public class DedupServiceInternalController extends AbstractAjaxController {
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private static final String ID_PREFIX_REGEX = "^\\d\\d\\|";
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private static final Log log = LogFactory.getLog(DedupServiceInternalController.class);
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@Resource
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private UniqueServiceLocator serviceLocator;
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@Autowired
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private ResultSetClientFactory resultSetClientFactory;
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@Value("${dnet.dedup.db.name}")
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private String dbName;
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/** The index client factory. */
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@Autowired
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private ResolvingIndexClientFactory indexClientFactory;
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@Value("${dnet.dedup.index.format}")
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private String indexFormat;
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@Value("${dnet.dedup.index.collection}")
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private String dedupIndexCollection;
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private IndexClient indexClient = null;
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public class OafResult {
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private long total;
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private List<Map<String, String>> results;
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public OafResult(final long total, final List<Map<String, String>> results) {
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super();
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this.setTotal(total);
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this.setResults(results);
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}
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public long getTotal() {
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return total;
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}
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public void setTotal(final long total) {
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this.total = total;
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}
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public List<Map<String, String>> getResults() {
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return results;
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}
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public void setResults(final List<Map<String, String>> results) {
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this.results = results;
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}
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}
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@ResponseBody
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@RequestMapping(value = "/ui/dedup/lookupConfigurations.do")
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public Map<String, List<String>> lookupConfigurations() throws ISLookUpException {
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final Map<String, List<String>> res = Maps.newHashMap();
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final ISLookUpService lookUpService = serviceLocator.getService(ISLookUpService.class);
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final String listEntityTypesXQuery =
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"distinct-values(for $x in //RESOURCE_PROFILE["
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+ ".//RESOURCE_TYPE/@value = 'DedupOrchestrationDSResourceType' and "
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+ ".//CONFIGURATION/@enabled='true'] return $x//ENTITY/@name/string())";
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for (final String entityType : lookUpService.quickSearchProfile(listEntityTypesXQuery)) {
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final String xquery =
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String.format(
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"for $x in //RESOURCE_PROFILE[" +
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".//RESOURCE_TYPE/@value = 'DedupOrchestrationDSResourceType' and .//ENTITY/@name='%s' ] " +
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"return $x//ACTION_SET/@id/string()", entityType);
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res.put(entityType, lookUpService.quickSearchProfile(xquery));
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}
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return res;
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}
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@ResponseBody
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@RequestMapping(value = "/ui/dedup/search.do")
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public OafResult search(@RequestParam(value = "entityType", required = true) final String type,
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@RequestParam(value = "query", required = true) final String userQuery,
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@RequestParam(value = "actionSet", required = true) final String actionSet,
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@RequestParam(value = "start", required = true) final int start,
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@RequestParam(value = "rows", required = true) final int rows,
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@RequestParam(value = "fields", required = true) final String fields) throws Exception {
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try {
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final String cqlQuery =
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String.format("(>s=SOLR s.q.op=AND) and oaftype = %s and actionset exact \"%s\" and deletedbyinference = false and %s", type, actionSet,
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userQuery);
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final LookupResponse rsp = getIndexClient().lookup(cqlQuery, null, start, (start + rows) - 1);
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final List<String> fieldList = Lists.newLinkedList(Splitter.on(",").omitEmptyStrings().trimResults().split(fields));
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final List<Map<String, String>> resList = Lists.newLinkedList(Iterables.transform(toOaf(rsp), getOaf2FieldMapFunction(type, fieldList)));
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return new OafResult(rsp.getTotal(), resList);
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} catch (final Exception e) {
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log.error("search error", e);
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throw e;
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}
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}
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@ResponseBody
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@RequestMapping(value = "/ui/dedup/searchById.do")
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public OafResult searchById(@RequestParam(value = "actionSet", required = true) final String actionSet,
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@RequestParam(value = "entityType", required = true) final String type,
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@RequestParam(value = "objidentifier", required = true) final String objidentifier,
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@RequestParam(value = "fields", required = true) final List<String> fields) throws Exception {
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final String cqlQuery = "objidentifier exact \"" + objidentifier + "\" and actionset exact \"" + actionSet + "\"";
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final LookupResponse rsp = getIndexClient().lookup(cqlQuery, null, 0, 1);
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final Iterable<Oaf> oafList = toOaf(rsp);
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final List<Map<String, String>> resList = Lists.newLinkedList(Iterables.transform(oafList, getOaf2FieldMapFunction(type, fields)));
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return new OafResult(rsp.getTotal(), resList);
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}
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@ResponseBody
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@RequestMapping(value = "/ui/dedup/commit.do")
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public boolean addSimRels(@RequestBody(required = true) final SimilarityGroup group) throws Exception {
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try {
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if (StringUtils.isBlank(group.getActionSet())) throw new IllegalArgumentException("missing actionset");
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final DatabaseService dbService = serviceLocator.getService(DatabaseService.class);
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final String version = InputDocumentFactory.getParsedDateField(DateUtils.now_ISO8601());
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group.setId(UUID.randomUUID().toString());
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group.setDate(version);
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// relational DB update
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log.info("adding similarities: " + group.getGroup());
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updateGroupSql(dbService, group, version);
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log.info("adding dissimilarities: " + group.getDissimilar());
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dissimilaritiesSql(dbService, group);
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// index update
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log.info("starting index update");
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final CloudSolrServer solrServer = getSolrServer();
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final SolrProtoMapper mapper = initProtoMapper();
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final Function<Oaf, SolrInputDocument> oaf2solr = oaf2solr(version, group.getActionSet(), mapper);
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final List<SolrInputDocument> buffer = Lists.newLinkedList();
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final List<Oaf> groupDocs = Lists.newArrayList(markDeleted(asOafBuilder(parseBase64(queryIndex(group.getGroup(), group.getActionSet())))));
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buffer.addAll(Lists.newArrayList(asIndexDocs(oaf2solr, groupDocs)));
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final DedupConfig dedupConf = getDedupConfig(group);
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final SolrInputDocument newRoot = oaf2solr.apply(OafEntityMerger.merge(dedupConf, newRootId(group), groupDocs).build());
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// newRoot.setField("actionset", dedupConf.getWf().getConfigurationId());
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buffer.add(newRoot);
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final Set<String> dissimIds = getUniqueDissimilarIds(group.getDissimilar());
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final List<Oaf> dissimDocs =
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Lists.newArrayList(markUnDeleted(asOafBuilder(parseBase64(queryIndex(dissimIds, group.getActionSet())))));
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buffer.addAll(Lists.newArrayList(asIndexDocs(oaf2solr, dissimDocs)));
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log.debug(String.format("adding %d documents to index %s", buffer.size(), dedupIndexCollection));
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final int addStatus = solrServer.add(buffer).getStatus();
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log.debug("solr add status: " + addStatus);
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log.debug(String.format("deleting %d documents from index %s", group.getRootIds().size(), dedupIndexCollection));
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for (final String rootId : Iterables.filter(group.getRootIds(), new Predicate<String>() {
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final String newRootId = (String) newRoot.getFieldValue("objidentifier");
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@Override
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public boolean apply(final String rootId) {
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return !rootId.equals(newRootId);
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}
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})) {
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solrServer.deleteById(mapper.getRecordId(rootId, group.getActionSet()));
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}
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final int commitStatus = solrServer.commit().getStatus();
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log.debug("solr commit status: " + commitStatus);
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return (addStatus == 0) && (commitStatus == 0);
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} catch (final Exception e) {
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log.error(e);
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throw e;
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}
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}
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private Set<String> getUniqueDissimilarIds(final Map<String, Set<String>> map) {
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final Set<String> res = Sets.newHashSet();
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for (final Set<String> ids : map.values()) {
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res.addAll(ids);
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}
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return res;
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}
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private DedupConfig getDedupConfig(final SimilarityGroup group) throws IOException {
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final Map<String, String> config = Maps.newHashMap();
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config.put("entityType", group.getEntityType().getType());
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config.put("configurationId", group.getActionSet());
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final DedupConfig dedupConf = DedupConfig.loadDefault(config);
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return dedupConf;
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}
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// helpers
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private IndexClient getIndexClient() throws IndexClientException, ISLookUpDocumentNotFoundException, ISLookUpException {
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if (indexClient == null) {
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indexClient = indexClientFactory.getClient(indexFormat, "index", "dedup", "solr");
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}
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return indexClient;
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}
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private static Map<String, Map<String, String>> paths = Maps.newHashMap();
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static {
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paths.put("result", new HashMap<String, String>());
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paths.put("organization", new HashMap<String, String>());
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paths.put("person", new HashMap<String, String>());
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| 286 |
|
|
paths.get("result").put("title", "result/metadata/title/value");
|
| 287 |
|
|
paths.get("result").put("dateofacceptance", "result/metadata/dateofacceptance/value");
|
| 288 |
|
|
paths.get("result").put("description", "result/metadata/description/value");
|
| 289 |
|
|
paths.get("result").put("author", "result/author/metadata/fullname/value");
|
| 290 |
|
|
|
| 291 |
|
|
paths.get("organization").put("legalname", "organization/metadata/legalname/value");
|
| 292 |
|
|
paths.get("organization").put("legalshortname", "organization/metadata/legalshortname/value");
|
| 293 |
|
|
paths.get("organization").put("websiteurl", "organization/metadata/websiteurl/value");
|
| 294 |
|
|
paths.get("organization").put("country", "organization/metadata/country/classid");
|
| 295 |
37011
|
claudio.at
|
|
| 296 |
|
|
paths.get("person").put("fullname", "person/metadata/fullname/value");
|
| 297 |
35947
|
claudio.at
|
}
|
| 298 |
|
|
|
| 299 |
|
|
private Function<Oaf, Map<String, String>> getOaf2FieldMapFunction(final String type, final List<String> fields) {
|
| 300 |
35892
|
claudio.at
|
return new Function<Oaf, Map<String, String>>() {
|
| 301 |
|
|
|
| 302 |
|
|
@Override
|
| 303 |
|
|
public Map<String, String> apply(final Oaf oaf) {
|
| 304 |
35947
|
claudio.at
|
|
| 305 |
|
|
final OafEntityDecoder ed = OafDecoder.decode(oaf).decodeEntity();
|
| 306 |
35892
|
claudio.at
|
final Map<String, String> res = Maps.newHashMap();
|
| 307 |
|
|
final String oafId = cleanId(oaf.getEntity().getId());
|
| 308 |
|
|
final List<String> idList = Lists.newArrayList(Iterables.transform(oaf.getEntity().getChildrenList(), new Function<OafEntity, String>() {
|
| 309 |
|
|
|
| 310 |
|
|
@Override
|
| 311 |
|
|
public String apply(final OafEntity e) {
|
| 312 |
|
|
return cleanId(e.getId());
|
| 313 |
|
|
}
|
| 314 |
|
|
}));
|
| 315 |
|
|
if (idList.isEmpty()) {
|
| 316 |
|
|
idList.add(oafId);
|
| 317 |
|
|
}
|
| 318 |
|
|
res.put("id", oafId);
|
| 319 |
|
|
res.put("idList", Joiner.on(",").join(idList));
|
| 320 |
|
|
res.put("groupSize", idList.isEmpty() ? "1" : idList.size() + "");
|
| 321 |
|
|
|
| 322 |
35947
|
claudio.at
|
for (final String fieldName : fields) {
|
| 323 |
37492
|
claudio.at
|
res.put(fieldName, Joiner.on("; ").skipNulls().join(ed.getFieldValues(paths.get(type).get(fieldName))));
|
| 324 |
35892
|
claudio.at
|
}
|
| 325 |
35947
|
claudio.at
|
|
| 326 |
35892
|
claudio.at
|
return res;
|
| 327 |
|
|
}
|
| 328 |
|
|
};
|
| 329 |
|
|
}
|
| 330 |
|
|
|
| 331 |
|
|
private String cleanId(final String id) {
|
| 332 |
|
|
return id.replaceFirst(ID_PREFIX_REGEX, "");
|
| 333 |
|
|
}
|
| 334 |
|
|
|
| 335 |
|
|
private String newRootId(final SimilarityGroup group) {
|
| 336 |
37440
|
claudio.at
|
return "dedup_wf_001::" + Collections.min(group.getGroup()).replaceFirst("^.*::", "");
|
| 337 |
|
|
// else return Collections.min(group.getRootIds());
|
| 338 |
35892
|
claudio.at
|
}
|
| 339 |
|
|
|
| 340 |
37440
|
claudio.at
|
private Iterable<SolrInputDocument> asIndexDocs(final Function<Oaf, SolrInputDocument> mapper, final Iterable<Oaf> protos) {
|
| 341 |
|
|
return Iterables.transform(protos, mapper);
|
| 342 |
35892
|
claudio.at
|
}
|
| 343 |
|
|
|
| 344 |
37507
|
claudio.at
|
private Function<Oaf, SolrInputDocument> oaf2solr(final String version, final String actionSetId, final SolrProtoMapper mapper) {
|
| 345 |
35892
|
claudio.at
|
return new Function<Oaf, SolrInputDocument>() {
|
| 346 |
|
|
|
| 347 |
|
|
@Override
|
| 348 |
|
|
public SolrInputDocument apply(final Oaf oaf) {
|
| 349 |
|
|
try {
|
| 350 |
37123
|
claudio.at
|
return mapper.map(oaf, version, "", actionSetId);
|
| 351 |
35892
|
claudio.at
|
} catch (final Throwable e) {
|
| 352 |
|
|
throw new IllegalArgumentException("unable to map proto to index document", e);
|
| 353 |
|
|
}
|
| 354 |
|
|
}
|
| 355 |
|
|
};
|
| 356 |
|
|
}
|
| 357 |
|
|
|
| 358 |
37416
|
claudio.at
|
private Iterable<String> queryIndex(final Iterable<String> ids, final String actionset) {
|
| 359 |
|
|
return Iterables.transform(ids, idToIndexDocumentMapper(actionset));
|
| 360 |
36133
|
claudio.at
|
}
|
| 361 |
35892
|
claudio.at
|
|
| 362 |
37416
|
claudio.at
|
private Function<String, String> idToIndexDocumentMapper(final String actionset) {
|
| 363 |
36133
|
claudio.at
|
return new Function<String, String>() {
|
| 364 |
|
|
|
| 365 |
35892
|
claudio.at
|
@Override
|
| 366 |
|
|
public String apply(final String id) {
|
| 367 |
|
|
try {
|
| 368 |
37416
|
claudio.at
|
final String cql = "objidentifier exact \"" + id + "\" and actionset exact \"" + actionset + "\"";
|
| 369 |
35892
|
claudio.at
|
final LookupResponse rsp = getIndexClient().lookup(cql, null, 0, 1);
|
| 370 |
|
|
|
| 371 |
|
|
log.debug(String.format("query index for id '%s', found '%d'", id, rsp.getTotal()));
|
| 372 |
|
|
|
| 373 |
|
|
return Iterables.getOnlyElement(rsp.getRecords());
|
| 374 |
|
|
} catch (final Throwable e) {
|
| 375 |
37416
|
claudio.at
|
log.error(e);
|
| 376 |
|
|
throw new RuntimeException("unable to query id: " + id, e);
|
| 377 |
35892
|
claudio.at
|
}
|
| 378 |
|
|
}
|
| 379 |
36133
|
claudio.at
|
};
|
| 380 |
35892
|
claudio.at
|
}
|
| 381 |
|
|
|
| 382 |
|
|
private Iterable<Oaf> parseBase64(final Iterable<String> r) {
|
| 383 |
|
|
return Iterables.transform(r, getXml2OafFunction());
|
| 384 |
|
|
}
|
| 385 |
|
|
|
| 386 |
37507
|
claudio.at
|
private SolrProtoMapper initProtoMapper() throws DocumentException, ISLookUpException, ISLookUpDocumentNotFoundException {
|
| 387 |
|
|
return new SolrProtoMapper(
|
| 388 |
35892
|
claudio.at
|
serviceLocator
|
| 389 |
37507
|
claudio.at
|
.getService(ISLookUpService.class)
|
| 390 |
|
|
.getResourceProfileByQuery(
|
| 391 |
|
|
"collection('')//RESOURCE_PROFILE[.//RESOURCE_TYPE/@value = 'MDFormatDSResourceType' and .//NAME='" + indexFormat
|
| 392 |
|
|
+ "']//LAYOUT[@name='index']/FIELDS"));
|
| 393 |
35892
|
claudio.at
|
}
|
| 394 |
|
|
|
| 395 |
36133
|
claudio.at
|
private Iterable<Oaf> markDeleted(final Iterable<Oaf.Builder> builders) {
|
| 396 |
35892
|
claudio.at
|
return Iterables.transform(builders, new Function<Oaf.Builder, Oaf>() {
|
| 397 |
|
|
|
| 398 |
|
|
@Override
|
| 399 |
|
|
public Oaf apply(final Oaf.Builder builder) {
|
| 400 |
|
|
// TODO add more changes to the Oaf object here as needed.
|
| 401 |
|
|
builder.getDataInfoBuilder().setDeletedbyinference(true);
|
| 402 |
|
|
return builder.build();
|
| 403 |
|
|
}
|
| 404 |
|
|
});
|
| 405 |
|
|
}
|
| 406 |
|
|
|
| 407 |
36133
|
claudio.at
|
private Iterable<Oaf> markUnDeleted(final Iterable<Oaf.Builder> builders) {
|
| 408 |
|
|
return Iterables.transform(builders, new Function<Oaf.Builder, Oaf>() {
|
| 409 |
|
|
|
| 410 |
|
|
@Override
|
| 411 |
|
|
public Oaf apply(final Oaf.Builder builder) {
|
| 412 |
|
|
// TODO add more changes to the Oaf object here as needed.
|
| 413 |
|
|
builder.getDataInfoBuilder().setDeletedbyinference(false);
|
| 414 |
|
|
return builder.build();
|
| 415 |
|
|
}
|
| 416 |
|
|
});
|
| 417 |
|
|
}
|
| 418 |
|
|
|
| 419 |
35892
|
claudio.at
|
private Iterable<Oaf.Builder> asOafBuilder(final Iterable<Oaf> oaf) {
|
| 420 |
|
|
return Iterables.transform(oaf, new Function<Oaf, Oaf.Builder>() {
|
| 421 |
|
|
|
| 422 |
|
|
@Override
|
| 423 |
|
|
public Builder apply(final Oaf oaf) {
|
| 424 |
|
|
return Oaf.newBuilder(oaf);
|
| 425 |
|
|
}
|
| 426 |
|
|
});
|
| 427 |
|
|
}
|
| 428 |
|
|
|
| 429 |
|
|
private Function<String, Oaf> getXml2OafFunction() {
|
| 430 |
|
|
return new Function<String, Oaf>() {
|
| 431 |
|
|
|
| 432 |
|
|
@Override
|
| 433 |
|
|
public Oaf apply(final String s) {
|
| 434 |
36238
|
claudio.at
|
// final String base64 = s.replaceAll("<record.*>", "").replace("</record>", "");
|
| 435 |
|
|
final String base64 = StringUtils.substringBefore(StringUtils.substringAfter(s, ">"), "<");
|
| 436 |
35892
|
claudio.at
|
try {
|
| 437 |
35901
|
claudio.at
|
final byte[] oaf = Base64.decodeBase64(base64);
|
| 438 |
|
|
return OafDecoder.decode(oaf).getOaf();
|
| 439 |
35892
|
claudio.at
|
} catch (final Throwable e) {
|
| 440 |
36238
|
claudio.at
|
throw new IllegalArgumentException("unable to decode base64 encoded Oaf object: " + base64);
|
| 441 |
35892
|
claudio.at
|
}
|
| 442 |
|
|
}
|
| 443 |
|
|
};
|
| 444 |
|
|
}
|
| 445 |
|
|
|
| 446 |
|
|
private Iterable<Oaf> toOaf(final LookupResponse rsp) {
|
| 447 |
|
|
return Iterables.transform(rsp.getRecords(), getXml2OafFunction());
|
| 448 |
|
|
}
|
| 449 |
|
|
|
| 450 |
37230
|
claudio.at
|
private void updateGroupSql(final DatabaseService dbService, final SimilarityGroup group, final String version) throws Exception {
|
| 451 |
35892
|
claudio.at
|
for (final String id : group.getGroup()) {
|
| 452 |
|
|
// sql.append(String.format("DELETE FROM entities WHERE objidentifier = '%s'; ", id));
|
| 453 |
37230
|
claudio.at
|
safeUpdateSql(dbService, String.format("DELETE FROM similarity_groups WHERE objidentifier = '%s'; ", id));
|
| 454 |
35892
|
claudio.at
|
}
|
| 455 |
36049
|
claudio.at
|
final String type = group.getEntityType().getType();
|
| 456 |
37230
|
claudio.at
|
safeUpdateSql(dbService,
|
| 457 |
|
|
String.format("INSERT INTO groups(id, entitytype, date, actionsetid) VALUES('%s', '%s', '%s', '%s'); ", group.getId(), type, version,
|
| 458 |
|
|
group.getActionSet()));
|
| 459 |
35892
|
claudio.at
|
for (final String id : group.getGroup()) {
|
| 460 |
37230
|
claudio.at
|
if (!dbService.contains(dbName, "entities", "id", id)) {
|
| 461 |
|
|
safeUpdateSql(dbService, String.format("INSERT INTO entities(id, entitytype) VALUES('%s', '%s'); ", id, type));
|
| 462 |
35892
|
claudio.at
|
}
|
| 463 |
|
|
|
| 464 |
|
|
// throw new Exception("id already defined in a similarity group.");
|
| 465 |
37230
|
claudio.at
|
safeUpdateSql(dbService, String.format("INSERT INTO similarity_groups(groupid, objidentifier) VALUES('%s', '%s'); ", group.getId(), id));
|
| 466 |
35892
|
claudio.at
|
}
|
| 467 |
|
|
}
|
| 468 |
|
|
|
| 469 |
37230
|
claudio.at
|
private void dissimilaritiesSql(final DatabaseService dbService, final SimilarityGroup group) {
|
| 470 |
|
|
|
| 471 |
36049
|
claudio.at
|
final String type = group.getEntityType().getType();
|
| 472 |
|
|
|
| 473 |
|
|
for (final Entry<String, Set<String>> e : group.getDissimilar().entrySet()) {
|
| 474 |
|
|
if (!dbService.contains(dbName, "entities", "id", e.getKey())) {
|
| 475 |
37230
|
claudio.at
|
safeUpdateSql(dbService, String.format("INSERT INTO entities(id, entitytype) VALUES('%s', '%s'); ", e.getKey(), type));
|
| 476 |
36049
|
claudio.at
|
}
|
| 477 |
|
|
for (final String id : e.getValue()) {
|
| 478 |
|
|
if (!dbService.contains(dbName, "entities", "id", id)) {
|
| 479 |
37230
|
claudio.at
|
safeUpdateSql(dbService, String.format("INSERT INTO entities(id, entitytype) VALUES('%s', '%s'); ", id, type));
|
| 480 |
36049
|
claudio.at
|
}
|
| 481 |
|
|
}
|
| 482 |
|
|
}
|
| 483 |
|
|
|
| 484 |
|
|
for (final Entry<String, Set<String>> e : group.getDissimilar().entrySet()) {
|
| 485 |
|
|
for (final String id : e.getValue()) {
|
| 486 |
37230
|
claudio.at
|
safeUpdateSql(dbService,
|
| 487 |
|
|
String.format("INSERT INTO dissimilarities(id1, id2, actionsetid) VALUES('%s', '%s', '%s'); ", e.getKey(), id, group.getActionSet()));
|
| 488 |
36049
|
claudio.at
|
}
|
| 489 |
|
|
}
|
| 490 |
37230
|
claudio.at
|
}
|
| 491 |
36049
|
claudio.at
|
|
| 492 |
37230
|
claudio.at
|
private boolean safeUpdateSql(final DatabaseService dbService, final String sql) {
|
| 493 |
|
|
try {
|
| 494 |
|
|
log.info(sql);
|
| 495 |
|
|
return dbService.updateSQL(dbName, sql);
|
| 496 |
|
|
} catch (final Throwable e) {
|
| 497 |
37235
|
claudio.at
|
log.error(e.getMessage());
|
| 498 |
|
|
log.debug(ExceptionUtils.getFullStackTrace(e));
|
| 499 |
37230
|
claudio.at
|
return false;
|
| 500 |
|
|
}
|
| 501 |
36049
|
claudio.at
|
}
|
| 502 |
|
|
|
| 503 |
35892
|
claudio.at
|
private CloudSolrServer getSolrServer() {
|
| 504 |
|
|
final String zk = getIndexSolrUrlZk();
|
| 505 |
35901
|
claudio.at
|
log.info(String.format("initializing solr client for collection %s, zk url: %s", dedupIndexCollection, zk));
|
| 506 |
35892
|
claudio.at
|
final CloudSolrServer solrServer = new CloudSolrServer(zk);
|
| 507 |
35901
|
claudio.at
|
solrServer.setDefaultCollection(dedupIndexCollection);
|
| 508 |
35892
|
claudio.at
|
|
| 509 |
|
|
return solrServer;
|
| 510 |
|
|
}
|
| 511 |
|
|
|
| 512 |
|
|
private String getIndexSolrUrlZk() {
|
| 513 |
|
|
try {
|
| 514 |
36191
|
claudio.at
|
return getResourceProfileByQuery("for $x in /RESOURCE_PROFILE[.//RESOURCE_TYPE/@value='IndexServiceResourceType'] return $x//PROTOCOL[./@name='solr']/@address/string()");
|
| 515 |
35892
|
claudio.at
|
} catch (final ISLookUpException e) {
|
| 516 |
|
|
throw new IllegalStateException("unable to read solr ZK url from service profile", e);
|
| 517 |
|
|
}
|
| 518 |
|
|
}
|
| 519 |
|
|
|
| 520 |
36191
|
claudio.at
|
private String getResourceProfileByQuery(final String xquery) throws ISLookUpException {
|
| 521 |
35892
|
claudio.at
|
log.debug("quering for service property: " + xquery);
|
| 522 |
|
|
final String res = serviceLocator.getService(ISLookUpService.class).getResourceProfileByQuery(xquery);
|
| 523 |
|
|
if (StringUtils.isBlank(res)) throw new IllegalStateException("unable to find unique service property, xquery: " + xquery);
|
| 524 |
|
|
return res;
|
| 525 |
|
|
}
|
| 526 |
|
|
|
| 527 |
|
|
}
|