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claudio.at
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package eu.dnetlib.msro.workflows.dedup;
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import java.nio.file.FileSystems;
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import java.nio.file.Path;
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import com.googlecode.sarasvati.Arc;
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import com.googlecode.sarasvati.Engine;
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import com.googlecode.sarasvati.NodeToken;
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import eu.dnetlib.data.hadoop.rmi.HadoopService;
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import eu.dnetlib.enabling.locators.UniqueServiceLocator;
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import eu.dnetlib.enabling.tools.blackboard.BlackboardJob;
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import eu.dnetlib.msro.workflows.nodes.blackboard.BlackboardWorkflowJobListener;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.springframework.beans.factory.annotation.Autowired;
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/**
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* Created by claudio on 14/10/15.
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*/
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39629
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claudio.at
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public class MinDistSearchHadoopJobNode extends DedupConfigurationAwareJobNode {
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private static final Log log = LogFactory.getLog(MinDistSearchHadoopJobNode.class);
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private final static String StatusParam = "MinDistSearchHadoopJobNode.status";
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private final static String DepthParam = "mindist_recursion_depth";
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private final static String UpdateCounterParam = "UpdateCounter.UPDATED";
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private final static String DebugParam = "mindist_DEBUG";
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@Autowired
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private UniqueServiceLocator serviceLocator;
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private boolean debug = false;
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private String outPathParam;
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@Override
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protected void prepareJob(final BlackboardJob job, final NodeToken token) throws Exception {
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String depthString = token.getFullEnv().getAttribute(DepthParam);
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log.debug(String.format("found depthParam: '%s'", depthString));
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if (StringUtils.isBlank(depthString)) {
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depthString = "0";
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}
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int depth = Integer.valueOf(depthString);
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final String cluster = token.getEnv().getAttribute("cluster");
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final String outputPath = getPath(token.getEnv().getAttribute("workDir"), depth);
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final HadoopService hadoopService = serviceLocator.getService(HadoopService.class);
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switch (getStatusFromEnv(token)) {
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case DATALOAD:
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setHadoopJob("dedupSimilarity2GraphJob");
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job.getParameters().put("mapred.output.dir", getPath(token.getEnv().getAttribute("workDir"), depth) + "/out");
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hadoopService.createHdfsDirectory(cluster, outputPath, true);
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break;
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case DEPTH_N:
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setHadoopJob("dedupMinDistGraphJob");
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final String newOutputPath = getPath(token.getEnv().getAttribute("workDir"), depth + 1);
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hadoopService.createHdfsDirectory(cluster, newOutputPath, true);
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job.getParameters().put(DepthParam, String.valueOf(depth));
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job.getParameters().put(DebugParam, String.valueOf(isDebug()));
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job.getParameters().put("mapred.input.dir", outputPath + "/out");
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job.getParameters().put("mapred.output.dir", newOutputPath + "/out");
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if (log.isDebugEnabled()) {
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log.debug(String.format("input job parameters: %s", job.getParameters()));
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}
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token.getFullEnv().setAttribute(DepthParam, String.valueOf(depth + 1));
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token.getFullEnv().setAttribute(getOutPathParam(), newOutputPath + "/out");
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break;
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}
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super.prepareJob(job, token);
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}
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private String getPath(final String basePath, final int depth) {
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Path path = FileSystems.getDefault().getPath(basePath, "depth_" + depth);
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return path.toAbsolutePath().toString();
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}
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private STATUS getStatusFromEnv(final NodeToken token) {
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if(StringUtils.isBlank(token.getEnv().getAttribute(StatusParam))) {
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return STATUS.DATALOAD;
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}
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STATUS current = STATUS.DATALOAD;
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try {
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current = STATUS.valueOf(token.getEnv().getAttribute(StatusParam));
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log.debug("found status: " + current.toString());
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} catch (IllegalArgumentException e) {}
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return current;
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}
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@Override
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protected BlackboardWorkflowJobListener generateBlackboardListener(final Engine engine, final NodeToken token) {
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return new BlackboardWorkflowJobListener(engine, token) {
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@Override
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protected void onDone(final BlackboardJob job) {
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final STATUS status = getStatusFromEnv(token);
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log.debug("complete phase: " + status);
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switch (status) {
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case DATALOAD:
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token.getFullEnv().setAttribute(StatusParam, STATUS.DEPTH_N.toString());
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token.getFullEnv().setAttribute(DepthParam, "0");
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complete("depth_n");
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break;
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case DEPTH_N:
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if (log.isDebugEnabled()) {
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log.debug(String.format("return job parameters: %s=%s, %s=%s", DepthParam, job.getParameters().get(DepthParam), UpdateCounterParam, job.getParameters().get(UpdateCounterParam)));
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}
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final String counter = job.getParameters().get(UpdateCounterParam);
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if (StringUtils.isBlank(counter)) {
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token.getFullEnv().removeAttribute(StatusParam);
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token.getFullEnv().removeAttribute(DepthParam);
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log.info(String.format("done iteration %s:%s", UpdateCounterParam, 0));
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complete(Arc.DEFAULT_ARC);
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} else {
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log.info(String.format("continue with next iteration %s:%s", UpdateCounterParam, counter));
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complete("depth_n");
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}
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break;
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}
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}
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private void complete(final String arc) {
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engine.complete(token, arc);
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engine.executeQueuedArcTokens(token.getProcess());
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}
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};
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}
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public boolean isDebug() {
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return debug;
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}
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public void setDebug(boolean debug) {
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this.debug = debug;
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}
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public String getOutPathParam() {
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return outPathParam;
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}
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public void setOutPathParam(String outPathParam) {
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this.outPathParam = outPathParam;
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}
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enum STATUS {DATALOAD, DEPTH_N}
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}
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