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package eu.dnetlib.pace;
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import java.io.IOException;
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import java.io.StringWriter;
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import java.util.ArrayList;
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import java.util.List;
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import com.google.common.collect.Lists;
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import com.google.gson.Gson;
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import eu.dnetlib.data.mapreduce.util.DNGFTest;
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import eu.dnetlib.data.proto.DNGFProtos.DNGF;
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import eu.dnetlib.data.proto.DNGFProtos.DNGFEntity;
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import eu.dnetlib.data.proto.FieldTypeProtos.Qualifier;
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import eu.dnetlib.data.proto.FieldTypeProtos.StructuredProperty;
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import eu.dnetlib.data.proto.FieldTypeProtos.StructuredProperty.Builder;
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import eu.dnetlib.data.proto.OrganizationProtos.Organization;
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import eu.dnetlib.data.proto.PersonProtos.Person;
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import eu.dnetlib.data.proto.PublicationProtos.Publication;
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import eu.dnetlib.data.proto.TypeProtos;
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import eu.dnetlib.pace.config.Config;
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import eu.dnetlib.pace.config.DedupConfig;
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import eu.dnetlib.pace.config.Type;
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import eu.dnetlib.pace.model.Field;
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import eu.dnetlib.pace.model.FieldValueImpl;
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import eu.dnetlib.pace.model.MapDocument;
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import eu.dnetlib.pace.model.ProtoDocumentBuilder;
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import eu.dnetlib.pace.model.gt.GTAuthor;
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import eu.dnetlib.pace.model.gt.GTAuthorMapper;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.RandomStringUtils;
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import org.apache.commons.lang3.StringUtils;
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public abstract class AbstractProtoPaceTest extends DNGFTest {
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protected DedupConfig getResultFullConf() {
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return DedupConfig.load(readFromClasspath("/eu/dnetlib/pace/result.full.pace.conf"));
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}
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protected DedupConfig getResultSimpleConf() {
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return DedupConfig.load(readFromClasspath("/eu/dnetlib/pace/result.simple.pace.conf"));
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}
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protected DedupConfig getResultConf() {
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return DedupConfig.load(readFromClasspath("/eu/dnetlib/pace/result.pace.conf"));
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}
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protected DedupConfig getOrganizationSimpleConf() {
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return DedupConfig.load(readFromClasspath("/eu/dnetlib/pace/organization.pace.conf"));
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}
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protected DedupConfig getResultAuthorsConf() {
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return DedupConfig.load(readFromClasspath("/eu/dnetlib/pace/result.authors.pace.conf"));
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}
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protected DedupConfig getPersonConf() {
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return DedupConfig.load(readFromClasspath("/eu/dnetlib/pace/person.pace.conf"));
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}
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protected DedupConfig getResultProdConf() {
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return DedupConfig.load(readFromClasspath("/eu/dnetlib/pace/result.prod.pace.conf"));
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}
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protected MapDocument person(final Config conf, final String id, final DNGF oaf) {
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return ProtoDocumentBuilder.newInstance(id, oaf.getEntity(), conf.model());
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}
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protected DNGF getPersonGT(final String path) {
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return new GTAuthorMapper().map(getGTAuthor(path));
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}
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protected GTAuthor getGTAuthor(final String path) {
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final Gson gson = new Gson();
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final String json = readFromClasspath(path);
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final GTAuthor gta = gson.fromJson(json, GTAuthor.class);
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return gta;
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}
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private String readFromClasspath(final String filename) {
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final StringWriter sw = new StringWriter();
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try {
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IOUtils.copy(getClass().getResourceAsStream(filename), sw);
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return sw.toString();
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} catch (final IOException e) {
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throw new RuntimeException("cannot load resource from classpath: " + filename);
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}
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}
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protected MapDocument result(final Config config, final String id, final String title) {
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return result(config, id, title, null, new ArrayList<String>(), null);
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}
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protected MapDocument result(final Config config, final String id, final String title, final String date) {
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return result(config, id, title, date, new ArrayList<String>(), null);
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}
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protected MapDocument result(final Config config, final String id, final String title, final String date, final List<String> pid) {
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return result(config, id, title, date, pid, null);
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}
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protected MapDocument result(final Config config, final String id, final String title, final String date, final String pid) {
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return result(config, id, title, date, pid, null);
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}
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protected MapDocument result(final Config config, final String id, final String title, final String date, final String pid, final List<String> authors) {
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return result(config, id, title, date, Lists.newArrayList(pid), authors);
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}
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protected MapDocument result(final Config config, final String id, final String title, final String date, final List<String> pid, final List<String> authors) {
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final Publication.Metadata.Builder metadata = Publication.Metadata.newBuilder();
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if (!StringUtils.isBlank(title)) {
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metadata.addTitle(getStruct(title, getQualifier("main title", "dnet:titles")));
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metadata.addTitle(getStruct(RandomStringUtils.randomAlphabetic(10), getQualifier("alternative title", "dnet:titles")));
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}
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if (!StringUtils.isBlank(date)) {
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metadata.setDateofacceptance(sf(date));
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}
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final DNGFEntity.Builder entity = dngfEntity(id, TypeProtos.Type.publication);
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final Publication.Builder result = Publication.newBuilder().setMetadata(metadata);
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if (authors != null) {
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for (final String author : authors) {
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result.addAuthor(person(author));
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}
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}
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entity.setPublication(result);
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if (pid != null) {
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for(String p : pid) {
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if (!StringUtils.isBlank(p)) {
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entity.addPid(sp(p, "doi"));
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//entity.addPid(sp(RandomStringUtils.randomAlphabetic(10), "oai"));
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}
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}
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}
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final DNGFEntity build = entity.build();
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return ProtoDocumentBuilder.newInstance(id, build, config.model());
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}
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private Person.Builder person(final String author) {
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final Person.Builder person = Person.newBuilder();
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final eu.dnetlib.pace.model.Person p = new eu.dnetlib.pace.model.Person(author, false);
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final Person.Metadata.Builder metadata = Person.Metadata.newBuilder();
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if (p.isAccurate()) {
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metadata.setFirstname(sf(p.getNormalisedFirstName()));
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metadata.addSecondnames(sf(p.getNormalisedSurname()));
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metadata.setFullname(sf(p.getNormalisedFullname()));
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} else {
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metadata.setFullname(sf(p.getOriginal()));
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}
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return person.setMetadata(metadata);
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}
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private DNGFEntity.Builder dngfEntity(final String id, final eu.dnetlib.data.proto.TypeProtos.Type type) {
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final DNGFEntity.Builder entity = DNGFEntity.newBuilder().setId(id).setType(type);
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return entity;
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}
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protected MapDocument organization(final Config config, final String id, final String legalName) {
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return organization(config, id, legalName, null);
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}
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protected MapDocument organization(final Config config, final String id, final String legalName, final String legalShortName) {
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final Organization.Metadata.Builder metadata = Organization.Metadata.newBuilder();
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if (legalName != null) {
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metadata.setLegalname(sf(legalName));
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}
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if (legalShortName != null) {
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metadata.setLegalshortname(sf(legalShortName));
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}
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final DNGFEntity.Builder entity = dngfEntity(id, TypeProtos.Type.publication);
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entity.setOrganization(Organization.newBuilder().setMetadata(metadata));
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return ProtoDocumentBuilder.newInstance(id, entity.build(), config.model());
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}
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private StructuredProperty sp(final String pid, final String type) {
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final Builder pidSp =
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StructuredProperty.newBuilder().setValue(pid)
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.setQualifier(Qualifier.newBuilder().setClassid(type).setClassname(type).setSchemeid("dnet:pid_types").setSchemename("dnet:pid_types"));
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return pidSp.build();
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}
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protected Field title(final String s) {
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return new FieldValueImpl(Type.String, "title", s);
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}
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protected static StructuredProperty.Builder getStruct(final String value, final Qualifier.Builder qualifier) {
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return StructuredProperty.newBuilder().setValue(value).setQualifier(qualifier);
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}
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/*
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* protected static StringField.Builder sf(final String s) { return StringField.newBuilder().setValue(s); }
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*
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* protected static Qualifier.Builder getQualifier(final String classname, final String schemename) { return
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* Qualifier.newBuilder().setClassid(classname).setClassname(classname).setSchemeid(schemename).setSchemename(schemename); }
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*/
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}
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