Revision 43901
Added by Sandro La Bruzzo about 8 years ago
modules/dnet-isti/trunk/src/main/resources/eu/dnetlib/efg/workflows/repo-hi/isti_aggregation_wf.xml.st | ||
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<?xml version="1.0" encoding="UTF-8"?> |
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<RESOURCE_PROFILE> |
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<HEADER> |
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<RESOURCE_IDENTIFIER value=""/> |
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<RESOURCE_TYPE value="WorkflowDSResourceType"/> |
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<RESOURCE_KIND value="WorkflowDSResources"/> |
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<RESOURCE_URI value=""/> |
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<DATE_OF_CREATION value=""/> |
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</HEADER> |
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<BODY> |
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<WORKFLOW_NAME>$name$</WORKFLOW_NAME> |
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<WORKFLOW_DESCRIPTION>$desc$</WORKFLOW_DESCRIPTION> |
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<WORKFLOW_INFO /> |
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<WORKFLOW_FAMILY>aggregator</WORKFLOW_FAMILY> |
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<WORKFLOW_PRIORITY>$priority$</WORKFLOW_PRIORITY> |
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<DATASOURCE id="$dsId$" interface="$interface$" /> |
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|
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<CONFIGURATION status="WAIT_SYS_SETTINGS" start="MANUAL"> |
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<PARAMETERS> |
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<PARAM name="transformationRuleId" description="Transformation Rule Identifier" required="true" managedBy="user" category="TRANSFORMATION_RULE_ID" type="string" function="listProfiles('TransformationRuleDSResourceType', '//TITLE')"/> |
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<PARAM name="collMdstoreId" description="Store for collected records" required="true" managedBy="system" category="MDSTORE_ID"/> |
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<PARAM name="cleanMdstoreId" description="Store for transformed records" required="true" managedBy="system" category="MDSTORE_ID"/> |
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</PARAMETERS> |
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<WORKFLOW> |
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<NODE isStart="true" name="collection" type="LaunchWorkflowTemplate"> |
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<DESCRIPTION>Collect records</DESCRIPTION> |
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<PARAMETERS> |
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<PARAM name="wfTemplateId" value="2c8e722e-c095-4e2c-a45d-a6ff75bf0cc9_V29ya2Zsb3dUZW1wbGF0ZURTUmVzb3VyY2VzL1dvcmtmbG93VGVtcGxhdGVEU1Jlc291cmNlVHlwZQ==" /> |
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<PARAM name="wfTemplateParams"> |
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<MAP> |
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<ENTRY key="dsId" value="$dsId$" /> |
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<ENTRY key="interface" value="$interface$" /> |
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<ENTRY key="collMdstoreId" ref="collMdstoreId" /> |
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</MAP> |
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</PARAM> |
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</PARAMETERS> |
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<ARCS> |
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<ARC to="transform"/> |
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</ARCS> |
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</NODE> |
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|
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<NODE name="transform" type="LaunchWorkflowTemplate"> |
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<DESCRIPTION>Clean record</DESCRIPTION> |
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<PARAMETERS> |
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<PARAM name="wfTemplateId" value="dcd92f5b-9033-46c7-aa7c-2dd367be672b_V29ya2Zsb3dUZW1wbGF0ZURTUmVzb3VyY2VzL1dvcmtmbG93VGVtcGxhdGVEU1Jlc291cmNlVHlwZQ==" /> |
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<PARAM name="wfTemplateParams"> |
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<MAP> |
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<ENTRY key="dsId" value="$dsId$" /> |
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<ENTRY key="interface" value="$interface$" /> |
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<ENTRY key="collMdstoreId" ref="collMdstoreId" /> |
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<ENTRY key="cleanMdstoreId" ref="cleanMdstoreId" /> |
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<ENTRY key="transformRuleId" ref="transformationRuleId" /> |
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</MAP> |
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</PARAM> |
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</PARAMETERS> |
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<ARCS> |
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<ARC to="success"/> |
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</ARCS> |
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</NODE> |
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</WORKFLOW> |
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<DESTROY_WORKFLOW_TEMPLATE id="1de73b0e-ccbf-442c-a88d-41b27daa0ba2_V29ya2Zsb3dUZW1wbGF0ZURTUmVzb3VyY2VzL1dvcmtmbG93VGVtcGxhdGVEU1Jlc291cmNlVHlwZQ=="> |
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<PARAMETERS> |
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<PARAM name="dsId" value="$dsId$" /> |
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<PARAM name="interface" value="$interface$" /> |
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<PARAM name="collMdstoreId" ref="collMdstoreId" /> |
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<PARAM name="cleanMdstoreId" ref="cleanMdstoreId" /> |
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</PARAMETERS> |
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</DESTROY_WORKFLOW_TEMPLATE> |
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</CONFIGURATION> |
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<NOTIFICATIONS/> |
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<SCHEDULING enabled="false"> |
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<CRON>9 9 9 ? * *</CRON> |
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<MININTERVAL>10080</MININTERVAL> |
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</SCHEDULING> |
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<STATUS/> |
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</BODY> |
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</RESOURCE_PROFILE> |
modules/dnet-isti/trunk/src/main/java/eu/dnetlib/msro/workflows/nodes/ObtainISTIDataSourceParamsJobNode.java | ||
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package eu.dnetlib.msro.workflows.nodes; |
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import javax.annotation.Resource; |
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import eu.dnetlib.enabling.locators.UniqueServiceLocator; |
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import eu.dnetlib.miscutils.datetime.DateUtils; |
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import eu.dnetlib.msro.workflows.graph.Arc; |
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import eu.dnetlib.msro.workflows.procs.Env; |
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import eu.dnetlib.msro.workflows.util.WorkflowsConstants; |
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import eu.dnetlib.rmi.enabling.ISLookUpService; |
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/** |
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* Created by sandro on 9/23/16. |
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*/ |
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public class ObtainISTIDataSourceParamsJobNode extends SimpleJobNode { |
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private String providerId; |
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@Resource |
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private UniqueServiceLocator serviceLocator; |
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@Override |
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protected String execute(final Env env) throws Exception { |
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final String query = "let $x := /*[.//RESOURCE_IDENTIFIER/@value='" + this.providerId + "']//EXTRA_FIELDS\n" |
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+ "return concat($x/FIELD[./key='OpenAireDataSourceId']/value, ' @@@ ', $x/FIELD[./key='NamespacePrefix']/value)"; |
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final String[] arr = this.serviceLocator.getService(ISLookUpService.class).getResourceProfileByQuery(query).split("@@@"); |
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final String origId = arr[0].trim(); |
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final String nsPrefix = arr[1].trim(); |
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// this is needed by the mdbuilder |
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// TODO: update mdbuilder to use the env attributes below, whose names are defined in WorkflowConstants |
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env.setAttribute("parentDatasourceId", origId); |
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env.setAttribute("namespacePrefix", nsPrefix); |
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env.setAttribute("dateOfCollection", DateUtils.now_ISO8601()); |
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// these are needed for validation and fill hostedby |
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env.setAttribute(WorkflowsConstants.LOG_DATASOURCE_ID, origId); |
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env.setAttribute(WorkflowsConstants.DATASOURCE_PREFIX, nsPrefix); |
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return Arc.DEFAULT_ARC; |
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} |
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public String getProviderId() { |
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return this.providerId; |
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} |
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public void setProviderId(final String providerId) { |
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this.providerId = providerId; |
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} |
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} |
modules/dnet-isti/trunk/src/main/resources/eu/dnetlib/isti/workflows/repo-hi/isti_aggregation_wf.xml.st | ||
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<?xml version="1.0" encoding="UTF-8"?> |
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<RESOURCE_PROFILE> |
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<HEADER> |
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<RESOURCE_IDENTIFIER value=""/> |
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<RESOURCE_TYPE value="WorkflowDSResourceType"/> |
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<RESOURCE_KIND value="WorkflowDSResources"/> |
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<RESOURCE_URI value=""/> |
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<DATE_OF_CREATION value=""/> |
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</HEADER> |
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<BODY> |
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<WORKFLOW_NAME>$name$</WORKFLOW_NAME> |
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<WORKFLOW_DESCRIPTION>$desc$</WORKFLOW_DESCRIPTION> |
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<WORKFLOW_INFO /> |
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<WORKFLOW_FAMILY>aggregator</WORKFLOW_FAMILY> |
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<WORKFLOW_PRIORITY>$priority$</WORKFLOW_PRIORITY> |
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<DATASOURCE id="$dsId$" interface="$interface$" /> |
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<CONFIGURATION status="WAIT_SYS_SETTINGS" start="MANUAL"> |
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<PARAMETERS> |
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<PARAM name="transformationRuleId" description="Transformation Rule Identifier" required="true" managedBy="user" category="TRANSFORMATION_RULE_ID" type="string" function="listProfiles('TransformationRuleDSResourceType', '//TITLE')"/> |
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<PARAM name="collMdstoreId" description="Store for collected records" required="true" managedBy="system" category="MDSTORE_ID"/> |
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<PARAM name="cleanMdstoreId" description="Store for transformed records" required="true" managedBy="system" category="MDSTORE_ID"/> |
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</PARAMETERS> |
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<WORKFLOW> |
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<NODE isStart="true" name="collection" type="LaunchWorkflowTemplate"> |
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<DESCRIPTION>Collect records</DESCRIPTION> |
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<PARAMETERS> |
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<PARAM name="wfTemplateId" value="2c8e722e-c095-4e2c-a45d-a6ff75bf0cc9_V29ya2Zsb3dUZW1wbGF0ZURTUmVzb3VyY2VzL1dvcmtmbG93VGVtcGxhdGVEU1Jlc291cmNlVHlwZQ==" /> |
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<PARAM name="wfTemplateParams"> |
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<MAP> |
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<ENTRY key="dsId" value="$dsId$" /> |
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<ENTRY key="interface" value="$interface$" /> |
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<ENTRY key="collMdstoreId" ref="collMdstoreId" /> |
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</MAP> |
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</PARAM> |
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</PARAMETERS> |
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<ARCS> |
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<ARC to="transform"/> |
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</ARCS> |
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</NODE> |
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<NODE name="transform" type="LaunchWorkflowTemplate"> |
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<DESCRIPTION>Clean record</DESCRIPTION> |
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<PARAMETERS> |
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<PARAM name="wfTemplateId" value="dcd92f5b-9033-46c7-aa7c-2dd367be672b_V29ya2Zsb3dUZW1wbGF0ZURTUmVzb3VyY2VzL1dvcmtmbG93VGVtcGxhdGVEU1Jlc291cmNlVHlwZQ==" /> |
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<PARAM name="wfTemplateParams"> |
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<MAP> |
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<ENTRY key="dsId" value="$dsId$" /> |
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<ENTRY key="interface" value="$interface$" /> |
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<ENTRY key="collMdstoreId" ref="collMdstoreId" /> |
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<ENTRY key="cleanMdstoreId" ref="cleanMdstoreId" /> |
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<ENTRY key="transformRuleId" ref="transformationRuleId" /> |
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</MAP> |
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</PARAM> |
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</PARAMETERS> |
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<ARCS> |
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<ARC to="success"/> |
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</ARCS> |
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</NODE> |
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</WORKFLOW> |
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<DESTROY_WORKFLOW_TEMPLATE id="1de73b0e-ccbf-442c-a88d-41b27daa0ba2_V29ya2Zsb3dUZW1wbGF0ZURTUmVzb3VyY2VzL1dvcmtmbG93VGVtcGxhdGVEU1Jlc291cmNlVHlwZQ=="> |
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<PARAMETERS> |
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<PARAM name="dsId" value="$dsId$" /> |
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<PARAM name="interface" value="$interface$" /> |
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<PARAM name="collMdstoreId" ref="collMdstoreId" /> |
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<PARAM name="cleanMdstoreId" ref="cleanMdstoreId" /> |
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</PARAMETERS> |
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</DESTROY_WORKFLOW_TEMPLATE> |
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</CONFIGURATION> |
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<NOTIFICATIONS/> |
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<SCHEDULING enabled="false"> |
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<CRON>9 9 9 ? * *</CRON> |
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<MININTERVAL>10080</MININTERVAL> |
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</SCHEDULING> |
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<STATUS/> |
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</BODY> |
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</RESOURCE_PROFILE> |
modules/dnet-isti/trunk/src/main/resources/eu/dnetlib/isti/workflows/nodes/applicationContext-msro-isti.xml | ||
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<?xml version="1.0" encoding="UTF-8"?> |
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<beans xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
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xmlns:p="http://www.springframework.org/schema/p" |
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xmlns="http://www.springframework.org/schema/beans" |
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xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd"> |
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<bean id="wfNodeObtainISTIDataSourceParams" |
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class="eu.dnetlib.msro.workflows.nodes.ObtainISTIDataSourceParamsJobNode" |
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scope="prototype" /> |
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</beans> |
modules/dnet-isti/trunk/src/main/resources/eu/dnetlib/bootstrap/profiles/RepositoryServiceResources/people.xml | ||
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<RESOURCE_PROFILE> |
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<HEADER> |
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<RESOURCE_IDENTIFIER value="8F08617D-970A-4CA7-8F93-C6C905585B2B_UmVwb3NpdG9yeVNlcnZpY2VSZXNvdXJjZXMvUmVwb3NpdG9yeVNlcnZpY2VSZXNvdXJjZVR5cGU="/> |
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<RESOURCE_TYPE value="RepositoryServiceResourceType"/> |
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<RESOURCE_KIND value="RepositoryServiceResources"/> |
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<RESOURCE_URI value=""/> |
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<DATE_OF_CREATION value="2015-07-24T09:38:39+00:00"/> |
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<PROTOCOL/> |
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</HEADER> |
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<BODY> |
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<CONFIGURATION> |
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<DATASOURCE_TYPE>pubsrepository::unknown</DATASOURCE_TYPE> |
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<DATASOURCE_ORIGINAL_ID provenance="ISTI">people</DATASOURCE_ORIGINAL_ID> |
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<DATASOURCE_AGGREGATED>false</DATASOURCE_AGGREGATED> |
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<ENVIRONMENTS> |
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<ENVIRONMENT>OPENAIRE</ENVIRONMENT> |
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</ENVIRONMENTS> |
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<TYPOLOGY>OCTOPUS</TYPOLOGY> |
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<MAX_SIZE_OF_DATASTRUCTURE>0</MAX_SIZE_OF_DATASTRUCTURE> |
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<AVAILABLE_DISKSPACE>0</AVAILABLE_DISKSPACE> |
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<MAX_NUMBER_OF_DATASTRUCTURE>0</MAX_NUMBER_OF_DATASTRUCTURE> |
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<OFFICIAL_NAME>People</OFFICIAL_NAME> |
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<ENGLISH_NAME>People</ENGLISH_NAME> |
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<ICON_URI/> |
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<COUNTRY>IT</COUNTRY> |
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<LOCATION> |
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<LONGITUDE>10.42</LONGITUDE> |
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<LATITUDE>43.71</LATITUDE> |
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<TIMEZONE>0.0</TIMEZONE> |
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</LOCATION> |
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<REPOSITORY_WEBPAGE></REPOSITORY_WEBPAGE> |
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<REPOSITORY_INSTITUTION>CNR </REPOSITORY_INSTITUTION> |
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<ADMIN_INFO>stefania.biagioni@isti.cnr.it</ADMIN_INFO> |
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<INTERFACES> |
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<INTERFACE active="true" compliance="isti" contentDescription="metadata" id="api_________::people::0" label="pubsrepository::unknown (driver)" removable="false" typology="pubsrepository::unknown"> |
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<ACCESS_PROTOCOL format="oai_dc" set="CDS074">oai</ACCESS_PROTOCOL> |
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<BASE_URL>http://webtemp.src.cnr.it/oai-pmh/oai2.php</BASE_URL> |
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<INTERFACE_EXTRA_FIELD name="metadata_identifier_path">//*[local-name()='header']/*[local-name()='identifier']</INTERFACE_EXTRA_FIELD> |
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</INTERFACE> |
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</INTERFACES> |
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<EXTRA_FIELDS> |
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<FIELD> |
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<key>OpenAireDataSourceId</key> |
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<value>people</value> |
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</FIELD> |
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<FIELD> |
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<key>NamespacePrefix</key> |
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<value>people______</value> |
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</FIELD> |
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<FIELD> |
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<key>VERIFIED</key> |
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<value>NO</value> |
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</FIELD> |
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<FIELD> |
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<key>aggregatorName</key> |
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<value>OPENAIRE</value> |
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</FIELD> |
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<FIELD> |
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<key>dateOfValidation</key> |
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<value/> |
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</FIELD> |
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<FIELD> |
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<key>dateOfCollection</key> |
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<value>2013-05-07</value> |
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</FIELD> |
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</EXTRA_FIELDS> |
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<REGISTERED_BY/> |
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</CONFIGURATION> |
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<STATUS> |
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<NUMBER_OF_OBJECTS>0</NUMBER_OF_OBJECTS> |
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<LAST_UPDATE value="2015-07-24T09:38:36Z"/> |
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</STATUS> |
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73 |
<QOS> |
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<AVAILABILITY>0</AVAILABILITY> |
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<CAPACITY/> |
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<THROUGHPUT>0.0</THROUGHPUT> |
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</QOS> |
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78 |
<SECURITY_PARAMETERS/> |
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79 |
<BLACKBOARD/> |
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</BODY> |
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</RESOURCE_PROFILE> |
modules/dnet-isti/trunk/src/main/resources/eu/dnetlib/bootstrap/profiles/workflows/collection.xml | ||
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22 | 22 |
<PARAM name="eprParam" value="collected_epr"/> |
23 | 23 |
</PARAMETERS> |
24 | 24 |
<ARCS> |
25 |
<ARC to="OBTAIN_PARAMS"/> |
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</ARCS> |
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</NODE> |
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<NODE name="OBTAIN_PARAMS" type="ObtainDliDataSourceParams"> |
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<DESCRIPTION>Obtain datasource parameters</DESCRIPTION> |
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30 |
<PARAMETERS> |
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<PARAM name="providerId" ref="dsId"/> |
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32 |
</PARAMETERS> |
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33 |
<ARCS> |
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34 | 25 |
<ARC to="MD_BUILDER"/> |
35 | 26 |
</ARCS> |
36 | 27 |
</NODE> |
modules/dnet-isti/trunk/src/main/resources/eu/dnetlib/bootstrap/profiles/workflows/repo_hi_isti.xml | ||
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24 | 24 |
<NODE name="VerifyDatasource" type="VerifyDatasource" isStart="true"> |
25 | 25 |
<DESCRIPTION>Verify if DS is pending</DESCRIPTION> |
26 | 26 |
<PARAMETERS> |
27 |
<PARAM name="expectedInterfaceTypologyPrefixes" value="isti"/>
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27 |
<PARAM name="expectedInterfaceTypologyPrefixes" value="pubsrepository::unknown"/>
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28 | 28 |
<PARAM name="expectedCompliancePrefixes" value="isti"/> |
29 | 29 |
</PARAMETERS> |
30 | 30 |
<ARCS> |
... | ... | |
45 | 45 |
<DESCRIPTION>Create Workflow</DESCRIPTION> |
46 | 46 |
<PARAMETERS> |
47 | 47 |
<PARAM name="wfName" value="Aggregate and Index efg content [Ingestion]"/> |
48 |
<PARAM name="wfTemplate" value="/eu/dnetlib/efg/workflows/repo-hi/isti_aggregation_wf.xml.st"/>
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48 |
<PARAM name="wfTemplate" value="/eu/dnetlib/isti/workflows/repo-hi/isti_aggregation_wf.xml.st"/>
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49 | 49 |
<PARAM name="description" value="Aggregate and Transform Metadata (publications) from PubsRepository [Ingestion]"/> |
50 | 50 |
</PARAMETERS> |
51 | 51 |
<ARCS> |
... | ... | |
87 | 87 |
<MAP> |
88 | 88 |
<ENTRY key="collMdstoreId" value="harv_id"/> |
89 | 89 |
<ENTRY key="cleanMdstoreId" value="clean_id"/> |
90 |
<ENTRY key="edmMdstoreId" value="edm_id"/> |
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<ENTRY key="patchMdstoreId" value="patch_id"/> |
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92 |
<ENTRY key="nativeObjectStoreId" value="OSNat_id"/> |
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93 |
<ENTRY key="indexId" value="index_id"/> |
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94 | 90 |
</MAP> |
95 | 91 |
</PARAM> |
96 | 92 |
</PARAMETERS> |
modules/dnet-isti/trunk/pom.xml | ||
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21 | 21 |
<artifactId>dnet-msro-service</artifactId> |
22 | 22 |
<version>5.0.0-SNAPSHOT</version> |
23 | 23 |
</dependency> |
24 |
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25 |
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26 | 24 |
<dependency> |
27 |
<groupId>eu.dnetlib</groupId> |
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28 |
<artifactId>dnet-graph-domain</artifactId> |
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29 |
<version>[1.0.0-SNAPSHOT,2.0.0)</version> |
|
30 |
</dependency> |
|
31 |
|
|
32 |
<dependency> |
|
33 | 25 |
<groupId>com.ximpleware</groupId> |
34 | 26 |
<artifactId>vtd-xml</artifactId> |
35 | 27 |
<version>2.11</version> |
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