|
1
|
//package eu.dnetlib.data.mapreduce.hbase.dedup.cc;
|
|
2
|
//
|
|
3
|
//import java.io.IOException;
|
|
4
|
//import java.nio.ByteBuffer;
|
|
5
|
//import java.util.Set;
|
|
6
|
//
|
|
7
|
//import com.google.common.collect.Sets;
|
|
8
|
//import eu.dnetlib.data.mapreduce.JobParams;
|
|
9
|
//import eu.dnetlib.data.mapreduce.util.DedupUtils;
|
|
10
|
//import eu.dnetlib.data.proto.DNGFProtos.DNGF;
|
|
11
|
//import eu.dnetlib.data.proto.DNGFProtos.DNGFRel;
|
|
12
|
//import eu.dnetlib.data.proto.KindProtos.Kind;
|
|
13
|
//import eu.dnetlib.data.proto.SubRelProtos.Dedup;
|
|
14
|
//import eu.dnetlib.data.proto.TypeProtos.Type;
|
|
15
|
//import eu.dnetlib.data.transform.xml.AbstractDNetXsltFunctions;
|
|
16
|
//import eu.dnetlib.pace.config.DedupConfig;
|
|
17
|
//import org.apache.commons.logging.Log;
|
|
18
|
//import org.apache.commons.logging.LogFactory;
|
|
19
|
//import org.apache.hadoop.hbase.client.Put;
|
|
20
|
//import org.apache.hadoop.hbase.io.ImmutableBytesWritable;
|
|
21
|
//import org.apache.hadoop.hbase.mapreduce.TableReducer;
|
|
22
|
//import org.apache.hadoop.hbase.util.Bytes;
|
|
23
|
//import org.apache.hadoop.io.Text;
|
|
24
|
//
|
|
25
|
///**
|
|
26
|
// * Created by claudio on 15/10/15.
|
|
27
|
// */
|
|
28
|
//public class ConnectedComponentsReducer extends TableReducer<Text, VertexWritable, ImmutableBytesWritable> {
|
|
29
|
//
|
|
30
|
// private static final Log log = LogFactory.getLog(ConnectedComponentsReducer.class);
|
|
31
|
//
|
|
32
|
// private DedupConfig dedupConf;
|
|
33
|
//
|
|
34
|
// private byte[] cfMergedIn;
|
|
35
|
//
|
|
36
|
// private byte[] cfMerges;
|
|
37
|
//
|
|
38
|
// @Override
|
|
39
|
// protected void setup(final Context context) {
|
|
40
|
//
|
|
41
|
// dedupConf = DedupConfig.load(context.getConfiguration().get(JobParams.DEDUP_CONF));
|
|
42
|
// log.info("dedup findRoots mapper\nwf conf: " + dedupConf.toString());
|
|
43
|
//
|
|
44
|
// final Type type = Type.valueOf(dedupConf.getWf().getEntityType());
|
|
45
|
// cfMergedIn = DedupUtils.getDedupCF_mergedInBytes(type);
|
|
46
|
// cfMerges = DedupUtils.getDedupCF_mergesBytes(type);
|
|
47
|
// }
|
|
48
|
//
|
|
49
|
// @Override
|
|
50
|
// protected void reduce(Text key, Iterable<VertexWritable> values, Context context) throws IOException, InterruptedException {
|
|
51
|
//
|
|
52
|
// final Set<String> set = Sets.newHashSet();
|
|
53
|
//
|
|
54
|
// for(VertexWritable v : values) {
|
|
55
|
// for(Text t : v.getEdges()) {
|
|
56
|
// set.add(t.toString());
|
|
57
|
// }
|
|
58
|
// }
|
|
59
|
//
|
|
60
|
// final byte[] root = DedupUtils.newIdBytes(ByteBuffer.wrap(Bytes.toBytes(key.toString())), dedupConf.getWf().getDedupRun());
|
|
61
|
//
|
|
62
|
// for(String q : set) {
|
|
63
|
// final byte[] qb = Bytes.toBytes(q);
|
|
64
|
// emitDedupRel(context, cfMergedIn, qb, root, buildRel(qb, root, Dedup.RelName.isMergedIn));
|
|
65
|
// emitDedupRel(context, cfMerges, root, qb, buildRel(root, qb, Dedup.RelName.merges));
|
|
66
|
//
|
|
67
|
// context.getCounter(dedupConf.getWf().getEntityType(), "dedupRel (x2)").increment(1);
|
|
68
|
// }
|
|
69
|
//
|
|
70
|
// }
|
|
71
|
//
|
|
72
|
// private void emitDedupRel(final Context context, final byte[] cf, final byte[] from, final byte[] to, final byte[] value) throws IOException,
|
|
73
|
// InterruptedException {
|
|
74
|
// final Put put = new Put(from).add(cf, to, value);
|
|
75
|
// put.setWriteToWAL(JobParams.WRITE_TO_WAL);
|
|
76
|
// context.write(new ImmutableBytesWritable(from), put);
|
|
77
|
// }
|
|
78
|
//
|
|
79
|
// private byte[] buildRel(final byte[] from, final byte[] to, final Dedup.RelName relClass) {
|
|
80
|
// final DNGFRel.Builder oafRel = DedupUtils.getDedup(dedupConf, new String(from), new String(to), relClass);
|
|
81
|
// final DNGF oaf =
|
|
82
|
// DNGF.newBuilder()
|
|
83
|
// .setKind(Kind.relation)
|
|
84
|
// .setLastupdatetimestamp(System.currentTimeMillis())
|
|
85
|
// .setDataInfo(
|
|
86
|
// AbstractDNetXsltFunctions.getDataInfo(null, "", "0.8", false, true).setInferenceprovenance(
|
|
87
|
// dedupConf.getWf().getConfigurationId())).setRel(oafRel)
|
|
88
|
// .build();
|
|
89
|
// return oaf.toByteArray();
|
|
90
|
// }
|
|
91
|
//
|
|
92
|
//}
|