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package eu.dnetlib.data.mdstore.modular.mongodb;
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import java.time.Duration;
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import java.time.LocalDate;
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import java.time.ZoneId;
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import java.util.ArrayList;
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import java.util.Collections;
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import java.util.Date;
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import java.util.List;
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import java.util.stream.Collectors;
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import com.mongodb.BasicDBList;
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import com.mongodb.BasicDBObject;
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import com.mongodb.DBObject;
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import com.mongodb.WriteConcern;
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import com.mongodb.client.FindIterable;
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import com.mongodb.client.MongoCollection;
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import com.mongodb.client.MongoDatabase;
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import com.mongodb.client.MongoIterable;
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import com.mongodb.client.model.Filters;
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import com.mongodb.client.model.UpdateOptions;
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import eu.dnetlib.data.mdstore.modular.connector.*;
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import eu.dnetlib.data.mdstore.modular.mongodb.utils.MDStoreUtils;
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import eu.dnetlib.enabling.tools.DnetStreamSupport;
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import eu.dnetlib.rmi.data.MDStoreServiceException;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.bson.conversions.Bson;
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import org.springframework.beans.factory.annotation.Required;
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/**
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* The Class MDStoreTransactionManager.
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*/
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public class MDStoreTransactionManagerImpl implements MDStoreTransactionManager {
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/**
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* The Constant log.
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*/
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private static final Log log = LogFactory.getLog(MDStoreTransactionManagerImpl.class);
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/**
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* The table name.
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*/
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private static String TABLE_NAME = "metadataManager";
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/**
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* The max number of concurrent transactions per mdstore.
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*/
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private int maxTransactions = 1;
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/**
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* The db.
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*/
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private MongoDatabase db;
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/**
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* The manager table.
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*/
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private MongoCollection<DBObject> managerTable;
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/**
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* The expired days.
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*/
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private int expiredDays;
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/**
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* Bootstrap manager.
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*/
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private void bootstrapManager() {
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log.debug("Bootstrap Manager start");
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final MongoCollection<DBObject> metadataColl = db.getCollection("metadata", DBObject.class);
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final FindIterable<DBObject> values = metadataColl.find();
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this.setManagerTable(db.getCollection(TABLE_NAME, DBObject.class));
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for (DBObject object : values) {
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final String id = (String) object.get("mdId");
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String newId = id;
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if (id.contains("_")) {
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newId = StringUtils.substringBefore(id, "_");
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}
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final BasicDBObject input = new BasicDBObject();
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input.put("mdId", id);
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input.put("currentId", newId);
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input.put("expiring", new String[] {});
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input.put("transactions", new String[] {});
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getManagerTable().insertOne(input);
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log.debug(String.format("Added %s to Metadata Manager data structure", id));
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}
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final BasicDBObject ensureIndex = new BasicDBObject();
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ensureIndex.put("mdId", 1);
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log.debug("Create index in MetadaManager ");
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this.getManagerTable().createIndex(ensureIndex);
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}
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/**
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* Gets the DBObject describing an mdstore. null if there is no mdstore with the given id.
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*
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* @param mdstoreID
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* @return DBObject or null
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*/
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private DBObject getMDStoreAsDBObject(String mdstoreID) throws MDStoreServiceException {
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final BasicDBObject query = new BasicDBObject();
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query.put("mdId", mdstoreID);
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final FindIterable<DBObject> it = this.getManagerTable().find(query);
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DBObject mdstoreInfo = it.first();
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return mdstoreInfo;
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}
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/**
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* Verify consistency.
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*
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* @throws MDStoreServiceException the MD store service exception
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*/
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@Override
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public void verifyConsistency() throws MDStoreServiceException {
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if (this.getManagerTable() == null) {
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final int size = DnetStreamSupport.generateStreamFromIterator(db.listCollectionNames().iterator()).filter(it -> it.contains(TABLE_NAME))
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.collect(Collectors.toList()).size();
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if (size == 0)
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bootstrapManager();
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else {
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this.setManagerTable(db.getCollection(TABLE_NAME, DBObject.class));
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}
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}
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if (this.getManagerTable() == null) throw new MDStoreServiceException("Something bad happen, unable to create managerTable");
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}
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/**
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* {@inheritDoc}
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*
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* @see MDStoreTransactionManager#createMDStore(String)
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*/
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@Override
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public void createMDStore(final String mdId) throws MDStoreServiceException {
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log.debug("Creating new mdstore");
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verifyConsistency();
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String newId = mdId;
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if (mdId.contains("_")) {
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newId = StringUtils.substringBefore(mdId, "_");
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}
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final BasicDBObject instance = new BasicDBObject();
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instance.put("mdId", mdId);
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instance.put("currentId", newId);
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instance.put("expiring", new String[] {});
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getManagerTable().insertOne(instance);
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}
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/**
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* {@inheritDoc}
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*
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* @see MDStoreTransactionManager#dropMDStore(String)
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*/
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@Override
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public void dropMDStore(final String mdId) throws MDStoreServiceException {
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verifyConsistency();
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log.debug("Droping MDStore: " + mdId);
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final BasicDBObject query = new BasicDBObject();
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query.put("mdId", mdId);
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final DBObject dropped = this.getManagerTable().findOneAndDelete(query);
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garbage();
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final String collectionName = (String) dropped.get("currentId");
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this.db.getCollection(collectionName).drop();
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this.db.getCollection("discarded-" + collectionName).drop();
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}
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/**
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* {@inheritDoc}
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*
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* @see MDStoreTransactionManager#getMDStoreCollection(String)
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*/
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@Override
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public String getMDStoreCollection(final String mdId) throws MDStoreServiceException {
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verifyConsistency();
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DBObject mdstoreInfo = getMDStoreAsDBObject(mdId);
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if (mdstoreInfo != null)
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return (String) mdstoreInfo.get("currentId");
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else return null;
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}
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/**
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* {@inheritDoc}
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*
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* @see MDStoreTransactionManager#startTransaction(String, boolean)
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*/
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@Override
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public String startTransaction(final String mdId, final boolean refresh) throws MDStoreServiceException {
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verifyConsistency();
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log.info("Start transaction for metadata store " + mdId);
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final DBObject mdstoreInfo = getMDStoreAsDBObject(mdId);
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if (mdstoreInfo == null) throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdId);
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String idCreation = StringUtils.substringBefore(mdId, "_");
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idCreation = idCreation + "::" + System.currentTimeMillis();
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BasicDBList values;
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if (mdstoreInfo.containsField("transactions")) {
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values = (BasicDBList) mdstoreInfo.get("transactions");
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if (values.size() > getMaxTransactions())
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throw new MDStoreServiceException("Cannot create more than " + getMaxTransactions() + " transactions, found: " + values.size() + ", mdId:"
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+ mdId);
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} else {
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values = new BasicDBList();
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}
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final BasicDBObject transactionMetadata = new BasicDBObject();
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transactionMetadata.put("id", idCreation.toString());
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transactionMetadata.put("refresh", refresh);
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transactionMetadata.put("date", new Date());
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values.add(transactionMetadata);
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mdstoreInfo.put("transactions", values);
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this.getManagerTable().findOneAndReplace(new BasicDBObject("_id", mdstoreInfo.get("_id")), mdstoreInfo);
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return idCreation.toString();
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}
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/**
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* {@inheritDoc}
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*
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* @see MDStoreTransactionManager#commit(String, String,
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* MDStore)
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*/
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@Override
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public boolean commit(final String transactionId, final String mdstoreId, final MDStore current) throws MDStoreServiceException {
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verifyConsistency();
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final DBObject mdstoreInfo = getMDStoreAsDBObject(mdstoreId);
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if (mdstoreInfo == null) throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdstoreId);
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final BasicDBList transactions = (BasicDBList) mdstoreInfo.get("transactions");
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final DBObject transaction = findTransaction(transactions, transactionId);
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if (transaction == null) throw new MDStoreServiceException("Error, unable to find transaction with Id " + transactionId);
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final boolean refresh = (Boolean) transaction.get("refresh");
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transactions.remove(transaction);
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final String oldId = (String) mdstoreInfo.get("currentId");
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if (refresh) {
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mdstoreInfo.put("currentId", transactionId);
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final BasicDBList stillUsed = (BasicDBList) mdstoreInfo.get("expiring");
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if (stillUsed.size() == 0) {
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db.getCollection(oldId).drop();
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db.getCollection("discarded-" + oldId).drop();
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}
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log.debug("Replaced collection ");
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} else {
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log.debug("commit incremental ");
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updateIncremental(transactionId, oldId);
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db.getCollection(transactionId).drop();
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db.getCollection("discarded-" + transactionId).drop();
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}
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this.getManagerTable().findOneAndReplace(new BasicDBObject("_id", mdstoreInfo.get("_id")), mdstoreInfo);
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log.info("Committed transaction for metadata store " + mdstoreId);
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return true;
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}
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/**
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* Find transaction.
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*
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* @param transactions the transactions
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* @param transactionId the transaction id
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* @return the DB object
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*/
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private DBObject findTransaction(final BasicDBList transactions, final String transactionId) {
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if (transactions.size() == 0) return null;
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for (int i = 0; i < transactions.size(); i++) {
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final BasicDBObject transaction = (BasicDBObject) transactions.get(i);
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final String id = (String) transaction.get("id");
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if (transactionId.equals(id)) return transaction;
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}
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return null;
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}
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/**
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* Gets the db.
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*
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* @return the db
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*/
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public MongoDatabase getDb() {
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return db;
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}
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/**
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* Sets the db.
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*
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* @param db the db to set
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*/
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@Required
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public void setDb(final MongoDatabase db) {
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this.db = db;
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}
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/**
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* {@inheritDoc}
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*
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* @see MDStoreTransactionManager#readMdStore(String)
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*/
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@Override
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public String readMdStore(final String mdStoreId) throws MDStoreServiceException {
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verifyConsistency();
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final DBObject mdstoreInfo = getMDStoreAsDBObject(mdStoreId);
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if (mdstoreInfo == null) throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdStoreId);
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final String currentId = (String) mdstoreInfo.get("currentId");
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final BasicDBList values = (BasicDBList) mdstoreInfo.get("expiring");
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updateMdstoreUsed(values, currentId);
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this.getManagerTable().findOneAndReplace(new BasicDBObject("_id", mdstoreInfo.get("_id")), mdstoreInfo);
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return currentId;
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}
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/**
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* Update mdstore used.
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*
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* @param values the values
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* @param mdId the md id
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*/
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private void updateMdstoreUsed(final BasicDBList values, final String mdId) {
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if (values.size() > 0) {
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for (int i = 0; i < values.size(); i++) {
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final DBObject obj = (DBObject) values.get(i);
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final String id = (String) obj.get("id");
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if (mdId.equals(id)) {
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obj.put("lastRead", new Date());
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return;
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}
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}
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}
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final BasicDBObject readStore = new BasicDBObject();
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readStore.put("id", mdId);
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readStore.put("lastRead", new Date());
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values.add(readStore);
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}
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/**
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* Gets the manager table.
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*
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* @return the managerTable
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*/
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public MongoCollection<DBObject> getManagerTable() {
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return managerTable;
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}
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/**
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* Sets the manager table.
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*
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* @param managerTable the managerTable to set
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*/
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public void setManagerTable(final MongoCollection<DBObject> managerTable) {
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this.managerTable = managerTable;
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}
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/*
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* (non-Javadoc)
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*
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* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#getInfoForCurrentMdStore(java.lang.String)
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*/
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@Override
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public MDStoreManagerInfo getInfoForCurrentMdStore(final String mdStoreId) throws MDStoreServiceException {
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verifyConsistency();
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final DBObject mdstoreInfo = getMDStoreAsDBObject(mdStoreId);
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if (mdstoreInfo == null) throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdStoreId);
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final MDStoreManagerInfo result = new MDStoreManagerInfo();
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result.setCurrentId((String) mdstoreInfo.get("currentId"));
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result.setMdId((String) mdstoreInfo.get("mdId"));
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final BasicDBList values = (BasicDBList) mdstoreInfo.get("expiring");
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for (int i = 0; i < values.size(); i++) {
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final MDStoreExpiredInfo stillused = new MDStoreExpiredInfo();
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final DBObject value = (DBObject) values.get(i);
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stillused.setId((String) value.get("id"));
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stillused.setLastRead((Date) value.get("lastRead"));
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result.addExpiredItem(stillused);
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}
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final BasicDBList transactions = (BasicDBList) mdstoreInfo.get("transactions");
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if (transactions != null) {
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for (int i = 0; i < transactions.size(); i++) {
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final MDStoreTransactionInfo transaction = new MDStoreTransactionInfo();
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final DBObject value = (DBObject) transactions.get(i);
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final String transactionId = (String) value.get("id");
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transaction.setId(transactionId);
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transaction.setDate((Date) value.get("date"));
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transaction.setRefresh((Boolean) value.get("refresh"));
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transaction.setSize(db.getCollection(transactionId).count());
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result.addTransactionInfo(transaction);
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}
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}
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return result;
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}
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|
384
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/*
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385
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* (non-Javadoc)
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*
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* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#dropUsed(java.lang.String, java.lang.String)
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*/
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@Override
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public Boolean dropUsed(final String mdId, final String idToDrop) throws MDStoreServiceException {
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verifyConsistency();
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final DBObject mdstoreInfo = getMDStoreAsDBObject(mdId);
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if (mdstoreInfo == null) throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdId);
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return dropStore(mdstoreInfo, idToDrop, "expiring");
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}
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private boolean dropStore(DBObject mdstoreInfo, final String idToDrop, String transactionListName) throws MDStoreServiceException {
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final BasicDBList transactionList = (BasicDBList) mdstoreInfo.get(transactionListName);
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for (int i = 0; i < transactionList.size(); i++) {
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final DBObject value = (DBObject) transactionList.get(i);
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final String currentUsedId = (String) value.get("id");
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if (currentUsedId.equals(idToDrop)) {
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db.getCollection(idToDrop).drop();
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db.getCollection("discarded-" + idToDrop).drop();
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transactionList.remove(value);
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mdstoreInfo.put(transactionListName, transactionList);
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this.getManagerTable().findOneAndReplace(new BasicDBObject("_id", mdstoreInfo.get("_id")), mdstoreInfo);
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return true;
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}
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}
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throw new MDStoreServiceException("Error, unable to drop collection " + idToDrop);
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}
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414
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/*
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* (non-Javadoc)
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*
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* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#garbage()
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*/
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@Override
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public void garbage() throws MDStoreServiceException {
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verifyConsistency();
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log.info("Start garbage collection of MdStore");
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final FindIterable<DBObject> it = this.managerTable.find();
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int totalDeleted = 0;
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425
|
for (DBObject currentObject : it) {
|
426
|
if (log.isDebugEnabled()) {
|
427
|
log.debug("start to check id: " + currentObject.get("currentId"));
|
428
|
}
|
429
|
garbageExpiring(currentObject, (String) currentObject.get("currentId"));
|
430
|
garbageTransactions(currentObject, (String) currentObject.get("currentId"));
|
431
|
this.getManagerTable().findOneAndReplace(new BasicDBObject("_id", currentObject.get("_id")), currentObject);
|
432
|
}
|
433
|
|
434
|
// DELETING Collection that are not in the metadataManager table
|
435
|
MongoIterable<String> collections = this.db.listCollectionNames();
|
436
|
for (String collection : collections) {
|
437
|
if ((collection.length() > 30) && (collection.contains("discarded-") == false)) {
|
438
|
final DBObject item = getMetadataObjectForCollections(collection);
|
439
|
|
440
|
if (shouldDelete(collection, item)) {
|
441
|
if (log.isDebugEnabled()) {
|
442
|
log.debug("delete collection: " + collection + " from mongo");
|
443
|
}
|
444
|
db.getCollection(collection).drop();
|
445
|
db.getCollection("discarded-" + collection).drop();
|
446
|
if (log.isDebugEnabled()) {
|
447
|
log.debug("delete collection: discarded-" + collection + " from mongo");
|
448
|
}
|
449
|
}
|
450
|
}
|
451
|
}
|
452
|
|
453
|
log.info("Complete garbage collection of MdStore, total store deleted: " + totalDeleted);
|
454
|
}
|
455
|
|
456
|
private DBObject getMetadataObjectForCollections(final String collectionName) {
|
457
|
if (collectionName == null) return null;
|
458
|
final String postfix = "_TURTdG9yZURTUmVzb3VyY2VzL01EU3RvcmVEU1Jlc291cmNlVHlwZQ==";
|
459
|
final String tmp = collectionName.contains("discarded-") == true ? StringUtils.substringAfter(collectionName, "discarded-") : collectionName;
|
460
|
final String collectionNameCleaned = StringUtils.substringBefore(tmp, "::") + postfix;
|
461
|
|
462
|
//DBObject query = QueryBuilder.start("mdId").is(collectionNameCleaned).get();
|
463
|
Bson query = Filters.eq("mdId", collectionNameCleaned);
|
464
|
return this.managerTable.find(query).first();
|
465
|
|
466
|
}
|
467
|
|
468
|
private boolean shouldDelete(final String collectionName, final DBObject metadataManagerInstance) {
|
469
|
log.debug("should delete instance " + metadataManagerInstance);
|
470
|
if ((metadataManagerInstance == null) || (metadataManagerInstance.get("currentId") == null)) {
|
471
|
log.debug("the instance has not currentID");
|
472
|
return true;
|
473
|
}
|
474
|
String currentId = (String) metadataManagerInstance.get("currentId");
|
475
|
if (collectionName.equals(currentId)) return false;
|
476
|
BasicDBList expiringList = (BasicDBList) metadataManagerInstance.get("expiring");
|
477
|
if (findInList(expiringList, collectionName, "id") == true) return false;
|
478
|
BasicDBList transactionsList = (BasicDBList) metadataManagerInstance.get("transactions");
|
479
|
return findInList(transactionsList, collectionName, "id") != true;
|
480
|
}
|
481
|
|
482
|
private boolean findInList(final BasicDBList list, final String object, final String tagname) {
|
483
|
if (list == null) return false;
|
484
|
for (int i = 0; i < list.size(); i++) {
|
485
|
DBObject currentObject = (DBObject) list.get(i);
|
486
|
final String id = (String) currentObject.get(tagname);
|
487
|
if (id.equals(object)) return true;
|
488
|
}
|
489
|
return false;
|
490
|
}
|
491
|
|
492
|
/**
|
493
|
* Delete.
|
494
|
*
|
495
|
* @param list the list
|
496
|
* @param toRemove the to remove
|
497
|
*/
|
498
|
private void delete(final BasicDBList list, final List<DBObject> toRemove) {
|
499
|
|
500
|
for (final DBObject obj : toRemove) {
|
501
|
if (log.isDebugEnabled()) {
|
502
|
log.debug("deleting " + obj);
|
503
|
}
|
504
|
list.remove(obj);
|
505
|
}
|
506
|
}
|
507
|
|
508
|
/**
|
509
|
* Garbage transactions.
|
510
|
*
|
511
|
* @param currentObject the current object
|
512
|
* @param currentId the current id
|
513
|
*/
|
514
|
private void garbageTransactions(final DBObject currentObject, final String currentId) {
|
515
|
if (log.isDebugEnabled()) {
|
516
|
log.debug("Start garbage transactions ");
|
517
|
}
|
518
|
|
519
|
final BasicDBList expiring = (BasicDBList) currentObject.get("transactions");
|
520
|
if ((expiring == null) || (expiring.size() <= getMaxTransactions())) return;
|
521
|
|
522
|
List<DBObject> expiringList = new ArrayList<>();
|
523
|
|
524
|
for (int i = 0; i < expiring.size(); i++) {
|
525
|
final DBObject cobj = (DBObject) expiring.get(i);
|
526
|
if (cobj != null) {
|
527
|
expiringList.add((DBObject) expiring.get(i));
|
528
|
}
|
529
|
|
530
|
}
|
531
|
|
532
|
Collections.sort(expiringList, MDStoreUtils.getComparatorOnDate());
|
533
|
|
534
|
List<DBObject> toRemove = new ArrayList<>();
|
535
|
int i = 0;
|
536
|
|
537
|
// We should remove the k item less recent
|
538
|
// where k = numberOftotalTransaction - maxNumberOfTransaction
|
539
|
// k = numberOfItemToRemove
|
540
|
|
541
|
while (((expiringList.size() - toRemove.size()) > getMaxTransactions()) || (i < expiringList.size())) {
|
542
|
DBObject currentObj = expiringList.get(i++);
|
543
|
String objectId = (String) currentObj.get("id");
|
544
|
if (!objectId.equals(currentId)) {
|
545
|
if (log.isDebugEnabled()) {
|
546
|
log.debug("delete collection: " + objectId + " from mongo");
|
547
|
}
|
548
|
db.getCollection(objectId).drop();
|
549
|
db.getCollection("discarded-" + objectId).drop();
|
550
|
if (log.isDebugEnabled()) {
|
551
|
log.debug("delete collection: discarded-" + objectId + " from mongo");
|
552
|
}
|
553
|
toRemove.add(currentObj);
|
554
|
} else {
|
555
|
if (log.isDebugEnabled()) {
|
556
|
log.debug("Cannot remove transaction " + objectId + " because is the currentId: " + currentId);
|
557
|
}
|
558
|
}
|
559
|
}
|
560
|
|
561
|
delete(expiring, toRemove);
|
562
|
log.info("Deleted " + toRemove.size() + " transactions, mdStore Id:" + currentObject.get("mdId"));
|
563
|
}
|
564
|
|
565
|
/**
|
566
|
* Garbage expiring.
|
567
|
*
|
568
|
* @param currentObject the current object
|
569
|
* @param currentId the current id
|
570
|
*/
|
571
|
private void garbageExpiring(final DBObject currentObject, final String currentId) {
|
572
|
if (log.isDebugEnabled()) {
|
573
|
log.debug("Start to search expiring mdstores for id: " + currentObject.get("mdId"));
|
574
|
}
|
575
|
final BasicDBList expiring = (BasicDBList) currentObject.get("expiring");
|
576
|
final List<DBObject> toRemove = new ArrayList<>();
|
577
|
if (log.isDebugEnabled()) {
|
578
|
if (expiring == null) {
|
579
|
log.debug("expiring list is null");
|
580
|
} else {
|
581
|
log.debug("expiring list size is :" + expiring.size());
|
582
|
}
|
583
|
}
|
584
|
if ((expiring == null) || (expiring.size() == 0)) {
|
585
|
log.debug("Deleted 0 expired collections, mdStore Id:" + currentObject.get("mdId"));
|
586
|
return;
|
587
|
}
|
588
|
for (int i = 0; i < expiring.size(); i++) {
|
589
|
final DBObject currentExpiredStore = (DBObject) expiring.get(i);
|
590
|
final String currentUsedId = (String) currentExpiredStore.get("id");
|
591
|
final long d = getExpiringDays(currentExpiredStore, "lastRead");
|
592
|
if (log.isDebugEnabled()) {
|
593
|
log.debug("the store :" + currentId + " expired since " + d + "days ");
|
594
|
}
|
595
|
// DELETE the collection where the last time they was read
|
596
|
// is more than 3 days ago
|
597
|
if (d > getExpiredDays()) {
|
598
|
if (currentUsedId.equals(currentId) == false) {
|
599
|
db.getCollection(currentUsedId).drop();
|
600
|
db.getCollection("discarded-" + currentUsedId).drop();
|
601
|
log.debug("deleted collection " + currentUsedId);
|
602
|
}
|
603
|
toRemove.add(currentExpiredStore);
|
604
|
}
|
605
|
}
|
606
|
delete(expiring, toRemove);
|
607
|
log.debug("Deleted expired " + toRemove.size() + "collections, mdStore Id:" + currentObject.get("mdId"));
|
608
|
}
|
609
|
|
610
|
/**
|
611
|
* Gets the expiring days.
|
612
|
*
|
613
|
* @param value the value
|
614
|
* @param paramName the param name
|
615
|
* @return the expiring days
|
616
|
*/
|
617
|
private long getExpiringDays(final DBObject value, final String paramName) {
|
618
|
|
619
|
final Date lastRead = (Date) value.get(paramName);
|
620
|
|
621
|
final LocalDate readDate = lastRead.toInstant().atZone(ZoneId.systemDefault()).toLocalDate();
|
622
|
return Duration.between(LocalDate.now().atTime(0, 0), readDate.atTime(0, 0)).toDays();
|
623
|
}
|
624
|
|
625
|
/**
|
626
|
* Gets the expired days.
|
627
|
*
|
628
|
* @return the expiredDays
|
629
|
*/
|
630
|
public int getExpiredDays() {
|
631
|
if (this.expiredDays == 0) return 3;
|
632
|
return expiredDays;
|
633
|
}
|
634
|
|
635
|
/**
|
636
|
* Sets the expired days.
|
637
|
*
|
638
|
* @param expiredDays the expiredDays to set
|
639
|
*/
|
640
|
public void setExpiredDays(final int expiredDays) {
|
641
|
this.expiredDays = expiredDays;
|
642
|
}
|
643
|
|
644
|
/**
|
645
|
* Update incremental.
|
646
|
*
|
647
|
* @param transactionId the transaction id
|
648
|
* @param currentId the current id
|
649
|
*/
|
650
|
private void updateIncremental(final String transactionId, final String currentId) {
|
651
|
final MongoCollection<DBObject> transaction = db.getCollection(transactionId, DBObject.class);
|
652
|
final MongoCollection<DBObject> mdstore = db.getCollection(currentId, DBObject.class);
|
653
|
final FindIterable<DBObject> it = transaction.find();
|
654
|
for (DBObject currentObj : it) {
|
655
|
|
656
|
BasicDBObject newObj = new BasicDBObject();
|
657
|
|
658
|
final String id = (String) currentObj.get("id");
|
659
|
final String body = (String) currentObj.get("body");
|
660
|
newObj.put("id", id);
|
661
|
newObj.put("body", body);
|
662
|
if (StringUtils.isNotBlank(id)) {
|
663
|
//setting to journaled write concern to be sure that when the write returns everything has been flushed to disk (https://docs.mongodb.org/manual/faq/developers/#when-does-mongodb-write-updates-to-disk)
|
664
|
//the explicit fsync command can't be run anymore: 'Command failed with error 13: 'fsync may only be run against the admin database.'
|
665
|
final MongoCollection<DBObject> mdstoreWrite = mdstore.withWriteConcern(WriteConcern.JOURNALED);
|
666
|
mdstoreWrite.replaceOne(new BasicDBObject("id", id), newObj, new UpdateOptions().upsert(true));
|
667
|
}
|
668
|
}
|
669
|
}
|
670
|
|
671
|
/*
|
672
|
* (non-Javadoc)
|
673
|
*
|
674
|
* @see eu.dnetlib.data.mdstore.modular.connector.MDStoreTransactionManager#dropTransaction(java.lang.String, java.lang.String)
|
675
|
*/
|
676
|
@Override
|
677
|
public Boolean dropTransaction(final String mdId, final String idToDrop) throws MDStoreServiceException {
|
678
|
verifyConsistency();
|
679
|
final DBObject mdstoreInfo = getMDStoreAsDBObject(mdId);
|
680
|
if (mdstoreInfo == null) throw new MDStoreServiceException("Error, unable to find Mdstore with Id " + mdId);
|
681
|
return dropStore(mdstoreInfo, idToDrop, "transactions");
|
682
|
}
|
683
|
|
684
|
public void garbageTransactionsOnStart() throws MDStoreServiceException {
|
685
|
verifyConsistency();
|
686
|
FindIterable<DBObject> it = this.managerTable.find();
|
687
|
for (DBObject currentObject : it) {
|
688
|
final BasicDBList transactions = (BasicDBList) currentObject.get("transactions");
|
689
|
if ((transactions != null) && (transactions.size() > 0)) {
|
690
|
for (int i = 0; i < transactions.size(); i++) {
|
691
|
final DBObject currentTransactions = (DBObject) transactions.get(i);
|
692
|
final String id = (String) currentTransactions.get("id");
|
693
|
db.getCollection(id).drop();
|
694
|
db.getCollection("discarded-" + id).drop();
|
695
|
log.debug("deleted collection " + id);
|
696
|
}
|
697
|
currentObject.put("transactions", new BasicDBList());
|
698
|
this.getManagerTable().findOneAndReplace(new BasicDBObject("_id", currentObject.get("_id")), currentObject);
|
699
|
}
|
700
|
}
|
701
|
}
|
702
|
|
703
|
/**
|
704
|
* Gets the max transactions.
|
705
|
*
|
706
|
* @return the maxTransactions
|
707
|
*/
|
708
|
public int getMaxTransactions() {
|
709
|
return maxTransactions;
|
710
|
}
|
711
|
|
712
|
/**
|
713
|
* Sets the max transactions.
|
714
|
*
|
715
|
* @param maxTransactions the maxTransactions to set
|
716
|
*/
|
717
|
public void setMaxTransactions(final int maxTransactions) {
|
718
|
this.maxTransactions = maxTransactions;
|
719
|
}
|
720
|
}
|