D-Net

package eu.dnetlib.dli.transform;

import eu.dnetlib.dli.DLIUtils;

import org.apache.commons.logging.Log;

import org.apache.commons.logging.LogFactory;

import org.dom4j.DocumentException;

import org.dom4j.io.SAXReader;

import org.mockito.Mock;

import org.mockito.Mockito;

import org.mockito.runners.MockitoJUnitRunner;

import javax.xml.transform.Transformer;

import javax.xml.transform.TransformerFactory;

import javax.xml.transform.stream.StreamResult;

import javax.xml.transform.stream.StreamSource;

import java.io.IOException;

import java.io.InputStream;

import java.io.StringWriter;

import java.util.List;

 * Created by sandro on 9/16/16.

 */

@RunWith(MockitoJUnitRunner.class)

    private static final String BASE_CFG_URL = "http://%s:9200/%s?pretty";

    private DLIUtils dliUtilsInstance;

    private UniqueServiceLocator uniqueServiceLocator;

    private ISLookUpService isLookUpServiceMock;

                + "return concat($x//FIELD[./key='NamespacePrefix']/value/text(),'@--@',$x//FIELD[./key='DataSourceId']/value/text(),'@--@',$x//ENGLISH_NAME )";

        dliUtilsInstance = Mockito.mock(DLIUtils.class);

        isLookUpServiceMock = Mockito.mock(ISLookUpService.class);

        dliUtilsInstance.setServiceLocator(uniqueServiceLocator);

        final InputStream inputStream = this.getClass().getResourceAsStream("/eu/dnetlib/transformation/data-center.json");

        Map<String, String> dataciteDatasource = new Gson().fromJson(IOUtils.toString(inputStream), Map.class);

        when(dliUtilsInstance.getServiceLocator()).thenReturn(uniqueServiceLocator);

                "r3d100010255@--@dli_________::r3d100010255@--@icpsr",

                "r3d100010464@--@dli_________::r3d100010464@--@ANDS",

                "r3d100010327@--@dli_________::r3d100010327@--@RCSB",

                "nature______@--@dli_________::nature______@--@Nature",

                "r3d100010578@--@dli_________::r3d100010578@--@IEDA",

        when(isLookUpServiceMock.quickSearchProfile(query)).thenReturn(resutlDS);

        DLIUtils.ontologies = OntologyLoader.loadOntologiesFromCp();

    }

        InputStream profile = getClass().getResourceAsStream(profilePath);

        SAXReader saxReader = new SAXReader();

        Document doc = null;

        try {

            doc = saxReader.read(profile);

        } catch (DocumentException e) {

            e.printStackTrace();

            throw new RuntimeException(e);

        }

        String xslt = doc.selectSingleNode("//SCRIPT/CODE/text()").asXML();

        return IOUtils.toInputStream(xslt.replace("<![CDATA[", "").replace("]]>", ""));

    }

        final InputStream xsltAsStream =

                loadFromTransformationProfile("/eu/dnetlib/bootstrap/profiles/TransformationRuleDSResources/rcsb_transform.xml");

        final TransformerFactory factory = TransformerFactory.newInstance();

        factory.newTransformer();

        final StreamSource xsltSource = new StreamSource(xsltAsStream);

        final InputStream recordStream = this.getClass().getResourceAsStream("/eu/dnetlib/dli/transform/rcsb_input.xml");

        final Transformer transformer = factory.newTransformer(xsltSource);

        transformer.setOutputProperty(OutputKeys.INDENT, "yes");

        final StringWriter output = new StringWriter();

        transformer.transform(new StreamSource(recordStream), new StreamResult(output));

        System.out.println(output.toString());

    }

    @Test

    public void testANDSTransform() throws Exception {

        final InputStream xsltAsStream =

                getClass().getResourceAsStream("/eu/dnetlib/dli/transform/ands.xslt");

        final TransformerFactory factory = TransformerFactory.newInstance();

        factory.newTransformer();

        final StreamSource xsltSource = new StreamSource(xsltAsStream);

        final InputStream recordStream = this.getClass().getResourceAsStream("/eu/dnetlib/dli/parser/inputANDS.xml");

        final Transformer transformer = factory.newTransformer(xsltSource);

        transformer.setOutputProperty(OutputKeys.INDENT, "yes");

        final StringWriter output = new StringWriter();

        transformer.transform(new StreamSource(recordStream), new StreamResult(output));

        System.out.println(output.toString());

    }

    @Test

    public void test3TUTransform() throws Exception {

        final InputStream xsltAsStream =

                getClass().getResourceAsStream("/eu/dnetlib/dli/transform/3tu.xslt");

        final TransformerFactory factory = TransformerFactory.newInstance();

        factory.newTransformer();

        final StreamSource xsltSource = new StreamSource(xsltAsStream);

        final InputStream recordStream = this.getClass().getResourceAsStream("/eu/dnetlib/dli/parser/3tu.xml");

        final Transformer transformer = factory.newTransformer(xsltSource);

        transformer.setOutputProperty(OutputKeys.INDENT, "yes");

        final StringWriter output = new StringWriter();

        transformer.transform(new StreamSource(recordStream), new StreamResult(output));

        System.out.println(output.toString());

    }

    @Test

        final InputStream xsltAsStream =

                getClass().getResourceAsStream("/eu/dnetlib/dli/transform/ieee.xslt");

        final TransformerFactory factory = TransformerFactory.newInstance();

        factory.newTransformer();

        final StreamSource xsltSource = new StreamSource(xsltAsStream);

        final InputStream recordStream = this.getClass().getResourceAsStream("/eu/dnetlib/dli/parser/ieee.xml");

        final Transformer transformer = factory.newTransformer(xsltSource);

        transformer.setOutputProperty(OutputKeys.INDENT, "yes");

        final StringWriter output = new StringWriter();

        transformer.transform(new StreamSource(recordStream), new StreamResult(output));

        System.out.println(output.toString());

    }

    @Test

    public void testIEDATransform() throws Exception {

        final InputStream xsltAsStream =

                getClass().getResourceAsStream("/eu/dnetlib/dli/transform/ieda.xslt");

        final TransformerFactory factory = TransformerFactory.newInstance();

        factory.newTransformer();

        final StreamSource xsltSource = new StreamSource(xsltAsStream);

        final InputStream recordStream = this.getClass().getResourceAsStream("/eu/dnetlib/dli/parser/ieda.xml");

        final Transformer transformer = factory.newTransformer(xsltSource);

        transformer.setOutputProperty(OutputKeys.INDENT, "yes");

        final StringWriter output = new StringWriter();

        transformer.transform(new StreamSource(recordStream), new StreamResult(output));

        System.out.println(output.toString());

    }

    @Test

        final InputStream xsltAsStream =

                getClass().getResourceAsStream("/eu/dnetlib/dli/transform/dli.xslt");

        final TransformerFactory factory = TransformerFactory.newInstance();

        factory.newTransformer();

        final StreamSource xsltSource = new StreamSource(xsltAsStream);

        final InputStream recordStream = this.getClass().getResourceAsStream("/eu/dnetlib/dli/parser/npg_incomplete.xml");

        final Transformer transformer = factory.newTransformer(xsltSource);

        transformer.setOutputProperty(OutputKeys.INDENT, "yes");

        final StringWriter output = new StringWriter();

        transformer.transform(new StreamSource(recordStream), new StreamResult(output));

        System.out.println(output.toString());

    }

    @Test

        final InputStream xsltAsStream =

                loadFromTransformationProfile("/eu/dnetlib/bootstrap/profiles/TransformationRuleDSResources/oai_datacite_transform.xml");

        final TransformerFactory factory = TransformerFactory.newInstance();

        factory.newTransformer();

        final StreamSource xsltSource = new StreamSource(xsltAsStream);

        transformer.setOutputProperty(OutputKeys.INDENT, "yes");

        final StringWriter output = new StringWriter();

        transformer.transform(new StreamSource(recordStream), new StreamResult(output));

        final String record = output.toString();

        final DMFResolverParser parser = new DMFResolverParser();

        log.debug(record);

//        Assert.assertTrue(object.getSubjects().size() > 0);

//

//

//

//        Assert.assertTrue(object.getRelations().size() > 0);

//

//        object.getRelations().forEach(it -> log.debug(it.getTargetPID()));

//

//        log.debug(object);

//

//        StringTemplate st = new StringTemplate();

//

//        final String template = IOUtils.toString(this.getClass().getResourceAsStream("/eu/dnetlib/dli/templates/DMFXML.st"));

//

//        st.setTemplate(template);

//

//        st.setAttribute("object", object);

//

//        System.out.println(st.toString());

    }

    @Test

    public void testICPSRTransform() throws Exception {

        final InputStream xsltAsStream =

                loadFromTransformationProfile("/eu/dnetlib/bootstrap/profiles/TransformationRuleDSResources/oai_icpsr_transform.xml");

        final TransformerFactory factory = TransformerFactory.newInstance();

        factory.newTransformer();

        final StreamSource xsltSource = new StreamSource(xsltAsStream);

        final InputStream recordStream = this.getClass().getResourceAsStream("/eu/dnetlib/dli/parser/InputICPSR.xml");

        final Transformer transformer = factory.newTransformer(xsltSource);

        transformer.setOutputProperty(OutputKeys.INDENT, "yes");

        final StringWriter output = new StringWriter();

        transformer.transform(new StreamSource(recordStream), new StreamResult(output));

        final String record = output.toString();

        System.out.println(record);

    }