D-Net

package eu.dnetlib.data.mdstore.plugins;

import java.io.StringReader;

import java.util.Map;

import javax.xml.bind.JAXBException;

import org.apache.commons.logging.Log;

import org.apache.commons.logging.LogFactory;

import org.dom4j.Document;

import org.dom4j.DocumentException;

import org.dom4j.Element;

import org.dom4j.io.SAXReader;

import com.mongodb.BasicDBObject;

import com.mongodb.DBObject;

import com.mongodb.client.MongoCollection;

import eu.dnetlib.data.mdstore.modular.mongodb.MongoMDStore;

import eu.dnetlib.data.mdstore.plugins.objects.MdRecord;

import eu.dnetlib.data.mdstore.plugins.objects.MdRecordConvertUtils;

import eu.dnetlib.rmi.data.MDStoreServiceException;

public abstract class MdRecordPlugin extends AbstractIstiMDStorePlugin {

	private static final Log log = LogFactory.getLog(MdRecordPlugin.class);

	@Override

	public final void process(final MongoMDStore store, final Map<String, String> params) throws MDStoreServiceException {

		final MongoCollection<DBObject> collPubs = store.getCollection();

		int count = 0;

		final SAXReader reader = new SAXReader();

		for (final DBObject obj : collPubs.find()) {

			try {

				final String recordId = obj.get("id").toString();

				final Document doc = reader.read(new StringReader(obj.get("body").toString()));

				final Element mdNode = (Element) doc.selectSingleNode("//*[local-name() = 'metadata']");

				final Element xmlRecord = (Element) mdNode.selectSingleNode("./record").detach();

				final MdRecord record = MdRecordConvertUtils.fromString(xmlRecord.asXML());

					mdNode.add(docPart.getRootElement());

					collPubs.updateOne(new BasicDBObject("id", recordId), new BasicDBObject("$set", new BasicDBObject("body", doc.asXML())));

					count++;

				}

			} catch (final DocumentException | JAXBException e) {

				log.warn("Problem parsing a mdstore record", e);

			}

		}

		log.info("Number of patched records: " + count);

	}

}